RNA id: XM_039825137.1


Basic Information

Item Value
RNA id XM_039825137.1
length 1955
RNA type mRNA
GC content 0.50
exon number 5
gene id cant1a
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14553169 ~ 14558801 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATAATCCTCCAACTCTAGTTAAAGTTCACAAGCATTGTATCAATCCTTAGCCATGGTTCCACAATCTGTGAGCAGAAAGAGCTCAGGACTGATTGTGGAGGTCTGCTTTAAGGATAGAGATGACCCACGGTGAGCGTTCTGGCAAGAGGAGACGAAGGGGTCTCTCCAGGCCTCCGTCCTCCATGCCTGCTCCTGCAGGCTTCACTCGACTGGAGCAGAATGAGCCTATGAACACTCTGCGTATCTCTGTCGGAGGCCTCCCTATGTTGGCTTCCATGGCCAGCACCACTGACCCTCGTTTCCGCCTTAAATGGAGGCCCATTGTGGCCGTGGCGTTCTCCCtggctgtgctgctgctgctcttcatCCACTTAAGTATGGGTTTGCGCTCCCGCTCCTACGACTCCCACAGCTGGGGACCCAGTCACAGTGACACCCAGTGGTCCGATTCCCATTACAACGACACCTACCCTCTCAGTCGACCTGAGCAAACGCCACAGGGCACCCGCTACCGCATTGGGGTCATTGCCGATCTGGACACAAGCTCTCGTAGTGACAAAAAGCTGACGTGGTTCAGCTACATGCGGCGAGGGCACCTGTTGGTGTCCCAAAGTGGCGACAAGGTATCAGTTGAATGGGATGCGGACAGGGTGGTGCTGGAAAGCCACCTTTCGGAGAAGGGCAGGGGTATGGAGCTCTCGGAGCTGGTGGTGTTCAATGGGAAGCTCTACAGCGTCGATGACAGGACGGGCATCGTCTACCAAATTGACGGTGACAAGATTGTGCCCTGGGTCATCTTACCTGATGGCGACGGCAGCGTTGCCAAAGGGTTCAAAGCCGAGTGGCTGGCAGTCAAGGACAAGCACCTGTATGTCGGCGGTCTGGGGAAAGAGTGGACCACCACGCAAGGCGAGTTTGTCAACAACAACCCAGAGTGGGTCAAAGTCGTGGGCTTCAGAGGGGATGTACAACATGAGAACTGGGTTCCCAAGTACAAATCTCTCAAGTCTGCCGCAGGGATAGAGCCTCCAGGGTATCTCATCCACGAGTCCGCAGCGTGGAGCGACATCCTGCAGCGCTGGTTTTTCCTCCCTCGCCGCGCCAGCAAGGAGCGCTACGAGGAGACGCAAGGCACGAACCTCGCCCTTAGCTGCTCGCCAGATTTCAAGGACATCATTGTAAGTCGAGTGGGTCCGCTTAACCGCACTCACGGATTCTCCTCCTTCAAGTTTGTCCCCAATACAGATGACCAGATCATCCTGGCTCTCAAGTCAGAGGAAGACGCCGGAAAGATCGCCACGTACATCATGGCCTTCACGCTTGACGGACGCATCCTTTTACCCGAAACCAAGATCGGGGATGTAAAATATGAGGGCTTGGAGTTCATATAGACTGAAAGACTCGTTCTTGAGGCCACTgcactgttttattttgtttacgaTCCAGTCACTGTTGAAGTTACTGTACTCGCTGCTTCCTCATTGAGACACAACTCCAATCCTCAAAGGATCGCCTTCATTGCAAATAGAAGCTGAGACTGTAAAATATGGTGGTCTCGTTTCGGGGTTTTGAGAAAGTGCCAGCCAACACAAACAATGCCAGTACGTCTGGTAGGGGGATCATCTCCTTCCTAGGACAAATGTGGCCCTTAAGAGTACTGTAGCCTTTCTTATTATGAATGTACAAATGATTGATTTATCCGACTGtgatttcttttcttaaaaCACACAGGTtcatgcacatactgtacactctcaaaaggtcaaaggttttttttttccctttgctCCATGTTAAACATTATTCTGTACACATCAAACATGTTTTCAGCGGAATAACAAAAGGTCTGTTTTTATCCTACATAAAACAATATTTGAAGGATATTTTGGTGAAAAATTAATGATGTAATGTTTTGGGTGGGATTACTTCTTTTAGTAAAAATCTTGATTCCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016462 pyrophosphatase activity molecular_function

KEGG:

id description
K12304 CANT1; soluble calcium-activated nucleotidase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209890 lncRNA upstream 82182 14470512 ~ 14470987 (+) True G154883
TU209888 lncRNA upstream 89706 14463262 ~ 14463463 (+) True G154881
TU209883 lncRNA upstream 94016 14454839 ~ 14459153 (+) True G154880
XR_005641958.1 lncRNA downstream 171817 14730618 ~ 14738716 (+) True LOC120575161
TU210028 lncRNA downstream 270701 14829502 ~ 14830164 (+) True G154982
TU210089 lncRNA downstream 393532 14952333 ~ 14954301 (+) True G155032
TU210099 lncRNA downstream 409142 14967943 ~ 14968410 (+) False G155036
TU210097 lncRNA downstream 409382 14968183 ~ 14969536 (+) True G155036
XM_039825544.1 mRNA upstream 3795 14545654 ~ 14549374 (+) True syngr2a
XM_039826120.1 mRNA upstream 123512 14428117 ~ 14429657 (+) True LOC120575371
XM_039824743.1 mRNA upstream 456293 14066786 ~ 14096876 (+) True LOC120574464
XM_039824744.1 mRNA upstream 456293 14067230 ~ 14096876 (+) False LOC120574464
XM_039825358.1 mRNA upstream 497326 14054552 ~ 14055843 (+) True LOC120574871
XM_039825136.1 mRNA downstream 28 14558829 ~ 14562753 (+) True LOC120574730
XM_039825831.1 mRNA downstream 14599 14573400 ~ 14581660 (+) True timp2b
XM_039824739.1 mRNA downstream 23802 14582603 ~ 14601556 (+) True usp36
XM_039824335.1 mRNA downstream 43761 14602562 ~ 14647069 (+) False cyth1a
XM_039824336.1 mRNA downstream 49732 14608533 ~ 14641750 (+) False cyth1a
TU209715 other upstream 698883 13847139 ~ 13854286 (+) True G154743
TU209660 other upstream 771484 13774701 ~ 13781685 (+) True LOC120573994
XR_005641808.1 other upstream 777439 13769019 ~ 13775730 (+) False LOC120573994
TU210109 other downstream 422435 14981236 ~ 14983283 (+) False si:dkey-282h22.5
unassigned_transcript_850 other downstream 426899 14985700 ~ 14986913 (+) True LOC120574428
unassigned_transcript_851 other downstream 433212 14992013 ~ 14992508 (+) True LOC120575440
TU210192 other downstream 576990 15135791 ~ 15139706 (+) True G155088
TU210329 other downstream 951424 15510225 ~ 15512810 (+) True arl16

Expression Profile