RNA id: XM_039825275.1


Basic Information

Item Value
RNA id XM_039825275.1
length 1935
RNA type mRNA
GC content 0.53
exon number 11
gene id dnaja3a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13748920 ~ 13754367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGACATGCGCAGTTTGTCGGGAGCAGGGGCCGGTATTGGAATGATGGCGTCCTCGGCTGCCCGTTGCTCATCACGCTGGATTACTGTCATCGTGTCCTCTGGACATCGCAGGGCCGCCGGTGCTGTTGTCTGCACTGGCAATGGAGGGGTCCGCAGTATCTCTACCGTGGGAGCGGAACGACTGTGGCGGGGAGGGAACCTGATGTGTGGCGGAGCAGGGAAAGCGTTGACATTGAGAGGGCTGTCAGGTGTCAAATCGCCCCATGCTGCCTCCACACTTTCCTTTCACACTAGTGCCCCTGCTAGCAGCAAGCAGGACTTCTACCAGATCCTCGGCGTACCTCGCACAGCAACCCAGAAAGAGATCAAGAAAGCTTACTACCAGATGGCCAAAAAGTATCACCCTGACACCAACAAAGATGACCCACAAGCCAAGGAAAAATTTGCTCAGCTGGCCGAAGCTTATGAGATCCTGAGTGATgaaggaaagaggaagcagTACGATACGTATGGCTCAACGGGCTTTGAAGCTGGTCAGGCCGGTGGTGGAGGGCAGCGCTACTGGTCTGGACAGGCCAGCAGCGTGGACCCAGAGGAGCTCTTCCGCAAGATCTTTGGGGAATTCTCTGGAGGCCGGGGGTTTGGAGACTTCAATGCCATATTTGAACAGCCACAGGAGTACATCATGGAGCTGACCTTCACTCAGGCAGCAAAGGGAGTCAACAAAGAGTTTTCCGTTAACATAGAAGCAGCCTGCGAGCGCTGTGATGGTAAGGGGCACGAGCCAGGCACCAAAGTCCAGCACTGCAACTTCTGCAACGGCTCCGGCATGGAGACTGTGAACACGGGCCCGTTTGTGATGCGCTCCACATGTCGTCGTTGTGGTGGCAAAGGCACAGTCATTTCCACCCCCTGTCACTCCTGTAATGGGGTGGGACAGACCAAGCAGAGGAAGACTGTGATGGTCCCTGTGCCTGCAGGAGTGGAGGATGGTCAGACTGTCAGAATGCCAGTTGGTAAGAAGGAGATCTTCATCACATTTCGGGTCCAAAAAAGTCCTGTGTTCAGGAGGGACGGCGCAGACGTCCACTCTGACCTTTTTGTCTCTGTGGCGCAAGCTATCCTGGGCGGCACGGCCAGGACACAAGGCCTTTATGAAACCCTAAACTTATCAATCCCTGCAGGCATCCAGATAGACCAGAGGATTCGTCTGTCAGGGAAGGGGATCGCTCGCCTCAGTGGCCATGGCTTCGGAGACCATTATGtccatgtcaaaataaaagttccCAGGACACTGACCGACAGACAAAGAGCTCTGCTAATGAGCTACGCTGAGGAGGAGACGGATGTGGAGGGGACAGTAAACGGTGTCACTAACACCACCACAGGTAAAAGGTCCTCCTGGAACTGAGAAGCTTCATCAGTAGATCAGAATGCAGAAGGGAGGACAGCGTAACGCAAGCACAGTCACATTATAAAGGGACAGGTGGCTAAGGAGTATTGGGCGTTGGATGAGGCCTATTGAGGTTCTGGATGGATCAGTACGGACCGACCTACCCAGCCCTGCAGTGAATAAGACAGAGGATCACCTGCTCTGTTCCTCTGCCATAGTGAATCCACACACAAGAGGATGTGTCAGTGCGCCAGTCACCTCTCCAGTCAGACGTCCACTGTGGCCATTTGGGCGGCAaagacttaaagtgctcatattatgctttttggcttttcccctttcttttattgtgatgtatatcttttttgtgcttGTTATAGGTTTACATCGTGAAAAAGTGAAAGTCCATCCCAAagaccatctccaacagaaaacactgttcacaaactgctccaaacagctctattgtagtccagcctttacttctgtgacaaacatgcgtcactttgtaacacacgtttaaatgctcgcctagctgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209634 lncRNA upstream 56757 13656015 ~ 13692172 (+) False vasnb
TU209616 lncRNA upstream 156295 13589517 ~ 13592634 (+) True G154682
TU209595 lncRNA upstream 255068 13492585 ~ 13493861 (+) True G154661
TU209556 lncRNA upstream 264211 13484039 ~ 13484718 (+) True G154639
TU209551 lncRNA upstream 273481 13474159 ~ 13475448 (+) True G154634
XR_005641994.1 lncRNA downstream 192240 13946606 ~ 13954723 (+) True LOC120575454
TU209761 lncRNA downstream 295465 14049831 ~ 14056966 (+) True G154777
TU209762 lncRNA downstream 295726 14050092 ~ 14056966 (+) False G154777
XR_005641955.1 lncRNA downstream 353415 14107781 ~ 14241105 (+) False LOC120575155
XR_005641957.1 lncRNA downstream 353460 14107826 ~ 14241105 (+) False LOC120575155
XM_039825273.1 mRNA upstream 56626 13666409 ~ 13692303 (+) True vasnb
XM_039825277.1 mRNA upstream 117174 13602828 ~ 13631755 (+) True glis2b
XM_039825278.1 mRNA upstream 117174 13623713 ~ 13631755 (+) False glis2b
XM_039824664.1 mRNA upstream 288102 13454492 ~ 13460827 (+) True LOC120574401
XM_039824663.1 mRNA upstream 294712 13448627 ~ 13454217 (+) True LOC120574400
XM_039823954.1 mRNA downstream 14653 13769019 ~ 13777259 (+) False LOC120573994
XM_039823955.1 mRNA downstream 14656 13769022 ~ 13778712 (+) False LOC120573994
XM_039823956.1 mRNA downstream 14657 13769023 ~ 13775730 (+) False LOC120573994
XM_039823953.1 mRNA downstream 14660 13769026 ~ 13778907 (+) False LOC120573994
XM_039823957.1 mRNA downstream 30470 13784836 ~ 13795684 (+) True ccnf
TU209346 other upstream 728261 13016986 ~ 13020668 (+) False LOC120574968
TU209291 other upstream 902332 12843423 ~ 12846597 (+) True G154461
TU209004 other upstream 1633737 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 2675103 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2996031 10752160 ~ 10752898 (+) True G153808
XR_005641807.1 other downstream 14653 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 14653 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 14653 13769019 ~ 13775553 (+) False LOC120573994
unassigned_transcript_849 other downstream 15337 13769703 ~ 13769776 (+) True trnat-agu_6
TU209660 other downstream 20335 13774701 ~ 13781685 (+) True LOC120573994

Expression Profile