RNA id: XM_039825338.1


Basic Information

Item Value
RNA id XM_039825338.1
length 4229
RNA type mRNA
GC content 0.45
exon number 5
gene id ankrd40
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10618653 ~ 10624540 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGTTGTTACATCTAAAGATGCCCCCCGATGAGGCGGTGATGTTTTTGGCAGCCCACTGACGGAACTCCGACACCACTGACTGATTGAATGAGTGCACTAGTATGTCGGTAGTGGTACTATAACGTGAACAAACAACTGAGATAAATGGCGAGGACGGGACCTACTGTCTATGATTGTGAACGCCAAAGACTCAACACGAAGTTGCATTAGCCGAAGCGATCTGCTGCCACAAGCTAGCACCAAAGACTACTAGCTAGCATCTCGTTGAGCTAGCCAGTAGGTAAGATTAGCCgggtagctaatgttagctgaaAAGTCTATTTTTAGTGGACCTTTGTGCCGTCGGTAGGAACGTCGTTAGGCAATTAGTTTTGACAACTTAATCCGAGAGGATTGTGTGTATCCTATGATCTCGCAGCGCTAGTTGTCTGTACCAAAATGTCCACCACTTCGTTGGATAAAGAATTACAGGAGCGACTGAGAGAGGCGTCTGCCATCGGGGATATCGACGAAGTGCGGACATTGGTGGAGAGTGGAGTAAACGTGAATTCACAGAATGAAATAAATGGCTGGACGTGCCTGCACTGGGCATGTAAGAGGAACCATAAGCACATAGTGTCCTACTTACTCAGTTATGGAGCAGATAAAGAAATCCTCACGGCTAAGGATGAGTTGGCCTCACAACTTACATCCAAACCAGAGATCAAACGGCTTTTAGGAGTTGAAGTGGAGGAAGTGCCTGAAGTCAAGGAGCCTGAGTTACCAATCATCCCAAACTACCTGTCTAACCCGGCCTTCATGTATTCCAAGATGGATAACCGGTCAGAGATCATCCTGGCACAGCACCTTACACAGAATGGTTCTGGAGAACACGCTGAGGATACGCACAGCGATTCACCCTCCCTTTCACCGACTCATGAGCCTCAGAAGTCACAGAGCCTGCTCTCTGACGTTCCCTCTCCTCCCCCAAACCCTACCACTGACAGCCAAGCCCAGGCTGGGGAATTCATTCCTGTGACTGAGCAAAATGGTGTGTCACCCAGCCCGGCCTCATCCCACAATCACGGCGTTGTTAACTGCACAGTGCCCATGGACCTGTCAGTTGAGCCGCACCTTGTCAACCATGCCGACTACCCGCATGCGGTGGCGCATAATGGCACCGTATGCTCGCCTCCGTTGGCCTCACATAGCCCCAGCTTGGCCAGCAGCAGTGGGAGCCAGGTCCAGGCCCCGGTGGCCGGCGCTAACCCAACTATGAGCAGGCAGCAGTCTATCCCACAGCAGCTGAGCTACGGCCAGGCTGGTGGGCCCATGCCAGCCTTCCAGCCTTTCTTCTTCACCAGCACCTTCCCTGTCAACGTGCAAGAGTTGGTGCTGAAGGTGCGTATCCAGAACCCCAACGCTCGGGAGAACGACTTCATTGAAGTGGAGCTGGACCGCCAGGAGCTTACCTATCGTTCCCTTCTGAGGGTCTGTTGCCGCGAGTTGGATATCAGCACTGAGCACGTGGAGAAGATCCGCAAGCTGCCGAACACCATGTTGAGAAAGGACAAGGACGTTGCTCGGCTGCAGGACTTTCAGGAGCTTGAGGTTGTGTTGGAGAAAGCAGAGGGCTTGTCCCTGTTCTCTGGGACTGGGGGCCTAACAGACAGACCCTGCTACAACATGAAGGCGTCCCGCCTCACCTACTAGAGCTACCGCGGAGCCTGAGGTCTCCCCGCTTATGATGGGCTTCTGTAGCTACCCTCAAGCCACCATAACTAGTTGCCCGCCCAGGTTCCCGATTACAGCTTTGTCCGGCTTTGGTGTTTCGCCAATTTCCTAactgggatttgtttttttcaagttcTGTAGCTCTTGTCCTCCTCCTGTCCTGCTCTGGCCCTCCTGCCGCTTTAGTGTACCCAACCAGTTGTAAGCAATTACTGATGCATGATGTCCTCGATTATGTGCGAAAGTATTTGggcctctttctcctctctttatctctttctctcctcccacTCCTGCACTTTGTGCCAAGGCTCCAGTGGGACAAAAGAGGGAGACATTGGCTTGTCTTCCATACGGACTGGACTTAATGGGATCCTGTAATAGCCTTATTTGGACACATCCCTATCCTGGCTGTGGACTATGGTCACAGAGGAAAAGACTTGGTCTGATAAGACAAAGAGCAGAGGAGCAAAAGGAAGGATTTACATAACTCTTACCGATAAGTTCATCATCAGTCCGCAGAATAAGTTGGACCTGCACACAGCAACTTGAATTTCTAGGAAATTGACCTGTAGAGTGCTATCAGATGTTCTAGCTGGCGTACACACTTTCATACATGCTGTAGGCATAAACCTTAGTGTCTTTCCTGCAGAGGGCATCCATTACTGTCCTAATTCTTAAGGTGGCAGTAATCTTACACCAGGTGAGACAAAAGCATCTTTGGACTAATAGTGCTTCTATTTGCTgactacacatacagtatgcttTAATCTATATCCACACAAGGATGGACTGGTTTCCTTTCATATTTAAATCATTCAGTCATACACTGTGGAAAAAGAAATCATTAGTTCTATTTGAATTGTTCTCTTTTCATGTCGGACATAAAAAGTAGAGATAAATGTGCAGCaactcatttttattttctacagCGCATTAGCACTTCTGCTTTGCAGGGCAAACTGTTAGGTTCAGTCAGCATAACACTAAAACTGTCAACTGTgaagtatttattttaaatgttttgggttGTATTGATTCTTACTAATGAAGCGAGATCATGCGCTTAAGAGTAGCGAGACTTGAGTCCCTGCCAAGGTTGTGTATATGGCTGCCCACTTGATTTATACTTTCATTTCAGTTGCTGTCCTTCTGTTTTAACTGTGATCAGAatccaaaccaaaaactaatcTAGCCAGCAAAGATACTAACTGCAGAACAAACTATCACTGCTTCAGGAAAGAATGCAGCTTTTGTTGacgtgaagaaaaaaagaaatgggatACGGCAAAGGACATGATGATCTCGGGTTGTATGATTGAGTGCGTCCTTGTTCCTCCAGCACTAATCAGAATTCTCATTGCTGACACAGTTATCTTTGTCACCCTGTGTCCTCTCAGTTCTATATGGTCAATCTATATGGTGACTAGGtttcttttaaaatataaatgtatggcTTCAGTTTGGTTGTTAAAGCCAGTCTAGTGCTAATTTTACATTTGTaattaaagaaaatgttgaCGTTAACGGTTTGTATTCCGTCGCTCAGAGACTGTCCGACTCAAACGGAGACTGCCAAGACGACTACACTTAAAACATtcttatactgtacattaagaATTTAACAGGTCAAGAGGCACAGCCACGTTGTGTCGGACGGTAACATTTTATGCTGCTTTCACCAACACTTTATGTTCCTTTAATTCTCGATGCTGAAGCTCATTTATTTGAAGCAGTGCAGTAGGCGGCCACTACACTTGTCCTACAATCAAAAGGTTTCTTACCCAGTGGTAACTGTTTACTGTTGAAATGTATACCTAAAGCTCttactgtatttgtatgttttatgatatattttttattaatttgtataatttttttaaccagttaggcctgttgtgtttgtgtcaaaaaaaaaagaaaaagagtctTCTATTGTGCAAGAAAGAGTTTAACAATGGGATGTAAAAGTGCTGCGATGCTGTTGTTGAGGCCAAGTGCAATGTGGGAGGAAAAGATTGTTGTGAGAAGAAAGGACTACCAAGAgtgcttattttctgtttccTACTATGTTAAATGCTTGATTAAGTAAAGTTGTGCCACATGTTTAAGGCAGGAGCTTGGTTGAGAAAGTGGGACAATGTATGGACAAACCCCTCCACCGCGCCGTTTGGTGCTCTGGGAGAGTGACCGCAGCATGTTTGAAATGGGTTTTTATAGGATCTTCTTTGATTCTGTGGAAAGGAGACCACTAACATTCTATTTGTTGGGGTTGCTTATTGTTCTAGACAAAGCAGAATACAGTTTGACTTAACCTATGCATTCAGAGTCTGATATTTTTATATCCAGTACGTCCTGTGTACTTGTAGAACTGATCTTAGGCACTGTTAAGCAGTTGCGTTCTTTTGTTCTGGAGACCTGTATCTGTTCTTTGATAAAAGCATGGTGAATTACttccctcttcttctctcaAATTGACCTTGTGTCTACTAAAAGCATAGTGTGTCCACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208283 lncRNA upstream 15689 10602417 ~ 10602964 (+) True G153740
TU208227 lncRNA upstream 219300 10399125 ~ 10399353 (+) True G153684
TU208163 lncRNA upstream 382714 10169942 ~ 10235939 (+) True G153640
TU207800 lncRNA upstream 665298 9950608 ~ 9953355 (+) True LOC120574664
XR_005641879.1 lncRNA upstream 667781 9947571 ~ 9950872 (+) False LOC120574664
TU208356 lncRNA downstream 84828 10709368 ~ 10709629 (+) True G153799
TU208383 lncRNA downstream 162322 10786862 ~ 10818172 (+) False G153817
TU208380 lncRNA downstream 188188 10812728 ~ 10818172 (+) True G153817
TU208497 lncRNA downstream 307179 10931719 ~ 10932529 (+) True G153875
TU208521 lncRNA downstream 343090 10967630 ~ 10969844 (+) True G153892
XM_039824434.1 mRNA upstream 43476 10418021 ~ 10575177 (+) True cacna1ia
XM_039824436.1 mRNA upstream 43476 10418021 ~ 10575177 (+) False cacna1ia
XM_039824435.1 mRNA upstream 43476 10418021 ~ 10575177 (+) False cacna1ia
XM_039824437.1 mRNA upstream 43476 10418021 ~ 10575177 (+) False cacna1ia
XM_039824438.1 mRNA upstream 43476 10418021 ~ 10575177 (+) False cacna1ia
XM_039825339.1 mRNA downstream 3906 10628446 ~ 10632635 (+) True wfikkn2a
XM_039824731.1 mRNA downstream 201963 10826503 ~ 10828557 (+) True LOC120574456
XM_039824734.1 mRNA downstream 204793 10829333 ~ 10832063 (+) True LOC120574457
XM_039825944.1 mRNA downstream 221204 10845744 ~ 10854576 (+) True LOC120575243
XM_039825942.1 mRNA downstream 221206 10845746 ~ 10854576 (+) False LOC120575243
TU208172 other upstream 277030 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 551911 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 644080 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 680049 9938019 ~ 9938604 (+) True LOC120574658
unassigned_transcript_844 other upstream 682372 9935671 ~ 9936281 (+) True LOC120574414
TU208368 other downstream 127620 10752160 ~ 10752898 (+) True G153808
XR_005641865.1 other downstream 439882 11064422 ~ 11073826 (+) False LOC120574482
TU209004 other downstream 1461321 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 2218883 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 2392446 13016986 ~ 13020668 (+) False LOC120574968

Expression Profile