RNA id: XM_039825719.1


Basic Information

Item Value
RNA id XM_039825719.1
length 2318
RNA type mRNA
GC content 0.49
exon number 11
gene id si:ch211-256e16.3
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12766625 ~ 12774140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCTTTAAATGCTGGTCGTTGCCGTTTGCCGTTTGATGGTGGGGAGAGTGGGCTCGCGTCAAAGTGGTCACGATTATGTCTGTCAGGCAATGTTTTCCACTGACCTGATAGAGTCCAAACAGGAGCGTGTTGCCATCAATGGAGTTGAGCCTCAGATGATTGGCATGTTGGTGAGCTACGCTTACACCTCAGAGGTCTACATTTCTAAAGCAAATGTGCAGGCCCTGCTGGCAGCTGCCAATCTGCTGGATGTGATGGCTGTTCGAGAGGCCTGTTGTCGTTTCATGGAGCATCAGATGGATGAGATGAACTGTGTGGGGATTCACTGCTTTGCTGAGGCCCATTCTTGTAAGGTGCTGGAGAAACGCAGCATGGACTACATTCACGAGAACTTCAGCAGTGTTTCTCAGCAGGAGGAgttcctgtctctgtgtgtggacAAACTGACAGAAATCATTGCCAGTGATTTTCTCAATGTGCCTAAAGAGGAGATGGTGTTTGAGGCCGCCATATCGTGGTTGAATAAATGTACGTCTCGCAAACAGAGCTTTGAAAAGGTCCTTGAACATATCCGGCTGCCTCTCATCAGCCCCTACTACCTCCACGATGTGATCGAGTCTCTGGATGTGGTGAAGGAGAACCAGGGTTGCCAGAAGCTCATCTCTGAGGCCAAGGACTACCTGCTGCTAAAGGACCGCCGTGGAGAGCTCTACTGCTCCAGATCCAGGCCACGCAGGTCCACCGagACAGCTGAAGTGATAGTGACAGTTGGCGGGGAGGATGACAAGGTGGTTCTGCGCAGCGTCGAGAGCTTCGATCCTGTGACGAATCAATGGAAGAATCTGGCCTGCCTGCCATTCGCTGTGAGCAAACACGGGCTGGTCCTGTCAGACTCCACTCTGTATTTGGCAGGAGGAGAGTTTCCTGATGGCTCAGCCAGCAGAGAGATGTGGCGCTACGACCCCTGCTTCGACTCCTGGATGGAGATGGCTCCCATGAATGTAGCTCGCTCTGAGTTAGGCCTGGTGATGCTGGACGGCTTTGTGTATGCAGTGGGAGGGTGGGAGGGACGCTCTCGCCTGGACTCGGTGGAGTGCTACAACCCTCACACCAACTCCTGGCAATTCACAGAATCTGTGAAGATGGCTGTCACAAGTCCTGCTGTGGTGGCCCTGGACGGACTCCTCTATGTTACTGGTGGTGCAATTCTAGAGGATGGCGACGGCACAGACCTTGCTCAGGTGTACAACCCTAAAACCTCTGTATGGACAGAGGTTGCCCCCATGCAGATCGCTCGGTCTGGTTCAGCTGCTTGCACACTCAAAGGAAAGATTTATGTTATAGGTGGATGGCATGCCTCGACAGAGAACACCGATAAGGTGGAGTGTTACAATCCCAAAACCAATCAGTGGACCATGTGCGCCCCCATGAAAGAACGTCGCTACCGGCCTGGTGCTGCTGTGGTGGATGGAAAGATCTACGTCCTGGGAGGAGAAGAAGGCTGGGACAGATATCATGACACTATCGAGAGGTACTGTGACGAGAAGGACATGTGGGAGATCATTGGGGAGATGACCACCAGTCGCAGctggctcagctgtgtgtctctCCAGCTGAGGAAGGACCTCCACATAAGCAGCTTTCCCGGGACGCCAAATGACAGCTGATCTGTCTGAGGAAATCTTATGTGGTTATTCTTTGCACCCTCATTAGGGGACGGTGCCCTACAAAGCTCAGAGCTGTGGAGGACAGCGAACTGAGAAGGGATGCCTGGATTTGGCAGAGCGCTGTTTGAGCTGTTACAGGCGGCAAAGCGTAGTCTGTTTTTAAACTGACTGCTTGTGGTATAAGTCTCACTTGGGTCCTGTCTTTAGACGTGGCGACAAAGGAAACATCGTACATGAATCTCAAGTTACTGATTGACGACTGCAGTCATAACTCGCCTCCGTATGATGTATGTTTAGGGTACTGTTATTGTTCGAGCACCTGAACTCTGAAGGTTTACTCGGCCAACAAAGTGGATTTTTGTATTCTGTGGCGTATTTAATGGGGTGTGACTAGCTGTGAGAAAAAATGGTAAACATTACGCTCTATCAAAAGATGCTCTATGGGCCAAAGAATCTACAATGTATGTGAATATCTTCGAAGGTCTCCTGTGAAAAAGTCGTCTATACGTGAGCAGTGTTTTTGTAATTAATCTTTGTAAGTTCTGAATGATTGTCTTTACTACTTGTAATATGTtgagtatatttttttaatgtgcaTAATGCATTTTAGTGACTTTAAATGGAGTGGGTTCTAATaaagatttttaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209223 lncRNA upstream 31745 12734683 ~ 12734912 (+) True G154410
TU209192 lncRNA upstream 197805 12566974 ~ 12568852 (+) True G154385
TU209182 lncRNA upstream 242985 12475767 ~ 12523672 (+) True G154379
TU209160 lncRNA upstream 364674 12401730 ~ 12401983 (+) True G154367
TU209139 lncRNA upstream 424307 12341419 ~ 12342350 (+) False LOC120574756
TU209270 lncRNA downstream 8634 12782774 ~ 12807819 (+) True G154447
TU209272 lncRNA downstream 8634 12782774 ~ 12827577 (+) False G154447
XR_005641886.1 lncRNA downstream 115279 12889419 ~ 12904818 (+) True LOC120574706
TU209328 lncRNA downstream 206113 12980253 ~ 12981635 (+) True G154494
XR_005641888.1 lncRNA downstream 217763 12991903 ~ 12995560 (+) True LOC120574709
XM_039823972.1 mRNA upstream 995 12761621 ~ 12765662 (+) True anks4b
XM_039823965.1 mRNA upstream 13297 12749211 ~ 12753360 (+) True dxo
XM_039823966.1 mRNA upstream 13297 12749211 ~ 12753360 (+) False dxo
XM_039823971.1 mRNA upstream 21600 12738248 ~ 12745057 (+) True LOC120574005
XM_039823832.1 mRNA upstream 73300 12685588 ~ 12693357 (+) True cacng5b
XM_039824235.1 mRNA downstream 753 12774893 ~ 12781445 (+) True LOC120574126
XM_039824239.1 mRNA downstream 8610 12782750 ~ 12807896 (+) True mosmoa
XM_039824237.1 mRNA downstream 42975 12817115 ~ 12841345 (+) False sdr42e2
XM_039824238.1 mRNA downstream 55667 12829807 ~ 12841344 (+) True sdr42e2
XM_039825987.1 mRNA downstream 79889 12854029 ~ 12859158 (+) True mfsd13al
TU209004 other upstream 651465 12085861 ~ 12115192 (+) True G154254
XR_005641865.1 other upstream 1692831 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 2013759 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 2425034 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 2699915 10065460 ~ 10066742 (+) True G153433
TU209291 other downstream 69283 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 242846 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 994879 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 994879 13769019 ~ 13775730 (+) False LOC120573994
XR_005641809.1 other downstream 994879 13769019 ~ 13775553 (+) False LOC120573994

Expression Profile