RNA id: XM_039825900.1


Basic Information

Item Value
RNA id XM_039825900.1
length 3274
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120575215
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13996902 ~ 14000676 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTGTACCTCCACAGCTCACATTGTAGATCACAACTTTCACGACTGCACCTCCCATGACAGCATAGGAAAACAAGACTAACGAAGCCAAACAAACAGGGAAGCAGAAGGAAAACAACGGACTCGCATTGACTGAAATTGTTAAAGGAATTTACTGTGGCGCACCGTGCGTAAAAGGCGCACTGGCCACTTTGCTGCGCGCTTCAATTGGTAACATTtgccttttgtttttaattgaagATTGCTTTTTCGGATTTTCATCCCCAAAGGGCTGAGAAAGTAATGTTAAAAATGACAGAGGAGCATGACAAATGTGGCAGCGACCAGCCGTGCAGTCCATCTGGTACAAACAGCTCCATGTCCCAGGACGAGTCCGACTCCGATGCTCCGTCCTCACCAACGGGCTCCGACGGCCAAGGATCCCTGCTCGCCAGTTTGGGCAAGAAACTAGACTCGGAGGATGACGACCGGTTCCCAGCTTGCATACGGGATGCCGTCTCTCAGGTCCTCAAGGGGTACGACTGGTCCTTGGTGCCTATGCCCGTGAGGGGGAACGGATCCCTGAAGAATAAACCTCACGTCAAGAGACCCATGAATGCGTTCATGGTTTGGGCGCAAGCGGCCCGCAGAAAGCTGGCGGATCAGTATCCACACCTGCACAATGCCGAGCTGAGCAAGACTCTGGGAAAACTGTGGCGTTTGCTCTCAGAAAGCGAGAAGAGGCCATTTGTAGATGAAGCAGAGAGACTCCGGGTTCAGCACAAGAAAGATCATCCAGACTACAAGTACCAGCCCCGGAGACGGAAGAATATGAAACCAGGCCAGAGCGACTCAGACTCAGGAGCAGAACTGGCACATCACATGTATAAAGCTGAACCAGGAATGGGAGGACTGGCAGGGATGACTGATGGACACCACCACCCTGAACATGCAGGGCAGCCCCATGGTCCCCCTACACCGCCCACTACTCCCAAAACAGACCTGCACCACGGGGTGAAGCAGGATCTGAAACACGAAGGCCGTCGTCTTGTTGACAGCAACAGGCAAAACATTGACTTCAGCAACGTAGACATCTCTGAGCTCAGCACTGATGTCATCAGCAACATGGAGACCTTCGACGTGCACGAGTTTGACCAGTACCTCCCCCTCAATGGCCATGCCTCGGGCTCCTCTACCCTGCCTTCAGACCACAGCCACGGCCAGGCTCCAGCCCCTGGTGGCCCTTACATTCCCTCATACAGCCATGCAGGCGCCAACGGGTCAACGTGGAGCCGCAAGGGCACCATGTCCTCCTCTGCTCCCTCCACCAGCGAGGTGGGCCAGCACCGGCTCCATATCAAAACGGAGCAACTGAGCCCCAGCCACTACAGCGAGCACTCCCACGGGTCACCCTCACACTCCGATTACGGCTCCTACAGTAGCCAGGCCTGTGTCACCTCGGCCACATCAGCTGCCTCGGCTGCAGCCTCTTTCTCCAGCTCCCAGTGTGACTATACTGACCTCCAGAGCTCCAACTATTACAACCCTTACTCCGGCTACCCCTCTAGCCTCTACCAGTACCCCTACTTTCACTCATCCAGGCGGCCCTACGGCAGCCCGATCCTTAACAGTCTGTCCATGGCTCCTGCCCACAGCCCCACCACCTCCAGCTGGGACCAGCCCGTCTACACCACGCTGTCTCGACCCTGAGGGGACAAGAAACAGTCAGTTCGCACCAGAGACTCATTCAGATTGATGCACTACTAATGAAGGAAGTAAGGAGCAGGTGGAGAAGTGTGCAGTAGGCTTCCTGTGACCATTTGaacatgaaacaaacaaaagaaaaaagtgccTGCTGATTTTATACAAAGTTATATCGCTGCGATGAaaacactgactttttttttttttacacaaagacaaattgtgttgttggtgagccAAAACTCCTCCATGAGGACATGTCGCCTACGCCTACATCCTGTACATCCCCCATCTTTTCCAGTTTAAGATTGTACGTGTGTGAACATTTGAGGTAAAGCAAAAGGCCTGCCACCGAGTCAGGTAGGAGAGAAACGCTTTGGCTCAATTCTGTTGTGAAGCAGATGGAGAAGCAGGAAACATTGGAGAACGTACATGGGACCGATTATGTGAATTTGCAGTGAAATTTACATTAGTGGCCAGAGCTATATCGCACCCCATTTGCATCTGTCGATCAGTCTTAACTAAATGGCTCTTATGAATCTTATAGTGTCATTTTGGCATAAAAGtcttatatgtatttatgttcaaacattattgtttttcttttgttcttaaGTAGATGAACACATGTAATGTGGGTTTGGTTATTTACAGTGCTGTTtggtttttaatgaaaaaaaggtCAATGAAGTGAAGGACAATACAAGTACCACAATTTCAATATCATTCCATTGAAGACCATTTTTCAGTAACATCTCCATTCCAAGCTGCAAGCAGACAGAGCTGGCCTAACATGCTCGCATAGGACAGAACAGGTGTATGAAAGCTATGCTTGGCAAATTGCGATTAGTCATGATCTAGGGTTAAAGGAAATGGGGTAAAATAACACCACACACTCTGAGTGACATGTCAGCTGGACCTCCTGCATACGTGGATGaacatgtaggctatatgtacatgcatctgtgtgtgtgtcagggagaTAAAGTGCTTCTGTATGTGTGAGCCATTTCCTTGCGAGAGAGATACATATCCCATGACGTAATACACACCAAATGATACTTAATCACCTCTTCAAATTATCTTTGAATTCATCCGTTACTCACAGAAGACTGTTTAGGGTTTAAGGAGGAAATGAAGAGTGTGTGAGTATTTGCCCATATTTATCTCATCAACCATCAAGTGGCAACTCACTGCTGCAGTCTCAAGCAAAACGTTTTTGTGCCTTCTAATGCTTCTTGTCAGTATTTCAGTATGAAATTGAATTATTAACATACTCCAGGCAGCACACAATCAGTAATCAACACCAGAGAATCCTACAGTTAACCTACTCCTGATTATATCCTTAATTTGATATCATTCCTTTCAGCCTTGGTTTGTAATGTTCTGTGAGATGCTGTATGCGAAACGTACTGAGCATCGAGCTCTAACTTTTGTCCACGGAACTGTGTTTTGTATATTCTGGTGTATAATTTTGAGAAAGGCTGTGAaaattattgttgttatatTAACTAGAGTTTCATTCATACATGCACAGCTAACACATTTGctggccatttttttttttttaataaaaaggtaCTTTTTCTTGA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641994.1 lncRNA upstream 42179 13946606 ~ 13954723 (+) True LOC120575454
TU209634 lncRNA upstream 304730 13656015 ~ 13692172 (+) False vasnb
TU209616 lncRNA upstream 404268 13589517 ~ 13592634 (+) True G154682
TU209595 lncRNA upstream 503041 13492585 ~ 13493861 (+) True G154661
TU209556 lncRNA upstream 512184 13484039 ~ 13484718 (+) True G154639
TU209761 lncRNA downstream 49155 14049831 ~ 14056966 (+) True G154777
TU209762 lncRNA downstream 49416 14050092 ~ 14056966 (+) False G154777
XR_005641955.1 lncRNA downstream 107105 14107781 ~ 14241105 (+) False LOC120575155
XR_005641957.1 lncRNA downstream 107150 14107826 ~ 14241105 (+) False LOC120575155
XR_005641954.1 lncRNA downstream 182661 14183337 ~ 14241105 (+) True LOC120575155
XM_039826246.1 mRNA upstream 112576 13867284 ~ 13884326 (+) True LOC120575449
XM_039826247.1 mRNA upstream 130346 13863511 ~ 13866556 (+) True LOC120575450
XM_039826245.1 mRNA upstream 149994 13840149 ~ 13846908 (+) True LOC120575448
XM_039826243.1 mRNA upstream 158811 13832571 ~ 13838091 (+) True LOC120575447
XM_039824604.1 mRNA upstream 169111 13796728 ~ 13827791 (+) True abca3b
XM_039825313.1 mRNA downstream 47410 14048086 ~ 14049437 (+) True LOC120574849
XM_039825358.1 mRNA downstream 53876 14054552 ~ 14055843 (+) True LOC120574871
XM_039824743.1 mRNA downstream 66110 14066786 ~ 14096876 (+) True LOC120574464
XM_039824744.1 mRNA downstream 66554 14067230 ~ 14096876 (+) False LOC120574464
XM_039826120.1 mRNA downstream 427441 14428117 ~ 14429657 (+) True LOC120575371
TU209715 other upstream 142616 13847139 ~ 13854286 (+) True G154743
TU209660 other upstream 215217 13774701 ~ 13781685 (+) True LOC120573994
XR_005641808.1 other upstream 221172 13769019 ~ 13775730 (+) False LOC120573994
TU210109 other downstream 980560 14981236 ~ 14983283 (+) False si:dkey-282h22.5
unassigned_transcript_850 other downstream 985024 14985700 ~ 14986913 (+) True LOC120574428
unassigned_transcript_851 other downstream 991337 14992013 ~ 14992508 (+) True LOC120575440
TU210192 other downstream 1135115 15135791 ~ 15139706 (+) True G155088
TU210329 other downstream 1509549 15510225 ~ 15512810 (+) True arl16

Expression Profile