RNA id: TCONS_00006875


Basic Information

Item Value
RNA id TCONS_00006875
length 5458
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_003510
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28166165 ~ 28424314 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTTTATAAATATTCCCTGAAAAATAGGCCTAGTTGGAGGAGAGGCGTGGCGCTGTCTTTTCTACAATATTCGTGTGGTTTTTGTCGTAGCAAACTCCTAATGTCATAAATGTTAAGCTAAATTCAATAGTACAAAGGTTCAAAATGAATGAGATGTCAGTAATGTGTACAGACAAATATCTTAGATTTATAGGCCTACTCCACTCTACTAAAACAAGTGATTTTGTTATAGTGCAAAACGTGACAGACATTACGGTAACTTACCTGGAGAAAACTCATATAGCCTTAAGTTACCCAACACCAGAACTTCGTTTTAGTCTGAAGGGGTCAGCAAACTCCCTGGGCATAGGCTGTCATGGGAACGACCTCTGGATCCTCCGTTGGGCTGTTTCTGTGCCCCCGCTCATCTTGAGGCAGAGCCATCCACATTTCTAAATTTTGATGGACTCCACCACAGCGACCGCAGAGCTTGGCTGGACAGTATATCCAGTGTCGGGAACAAGTGACAGCAGTTGGGAAGAAGTAAGCGGCTACGATGAGAACATGAACACCATCCGTACCTATCAGGTGTGCAATGTCTTTGATGCCAACCAAAACAACTGGGTGCGCACCAAGTACATCCGGCGAAGAGGAGCTCAACGTATTCATGTGGAGATGAAATTCTCAGTGCGAGACTGCAGCAGCATCCCAAGAGTCCCTGGTTCTTGTAAGGAAACCTTCAATCTTTACTACTACGAATCTGACAGCGACACTGCCACCAAAACATTCCCCCCATGGATGGAAAACCCATGGATAAAGGTGGACACCATTGCGGCCGACGAGAGTTTCTCACAGGTAGACCTGGGTGGACGTGTGATGAAGATTAACACTGAGGTTCGCAGTTTTGGCCCCGTCTCCCGTAACGGTTTTTACCTAGCCTTTCAGGACTATGGCGGGTGCATGTCATTGATCGCCGTGCGTGTGTTCTACCGGAAGTGCCCTCGTACCATACGTAACGGAGCGATATTTCAGGAGACGCTTTCGGGAGCAGAGAGCACTTCACTTGTAGCGGCACGGGGAGTCTGTATCCCTAATGCTGAGGAGGTCGACGTTCCCATTAAACTGTACTGTAATGGAGATGGAGAGTGGATGGTCCCTATTGGTCGCTGTATGTGTAAAGCAGGTCACGAGGCAGTGGAAAATGGAACTGTTTGCAGAGCATGCCCTTCGGGTTTCTTCAAGACTGCACAAGGTGACGAGAAATGTCTGCAGTGTCCAATCAACAGCCGTACAACCAACGATGGAGCCACCAACTGCGTCTGCCGAAATGGATATTACCGCACAGACTCTGACCCGCTAGAGATGCCCTGCACAACTGTGCCGTCAGCCCCTCAAAATGTCATCTCCAGTGTGAACGAGACATCTCTGATGCTGGAGTGGAATCCTCCGCGAGAGACTGGTGGTCGTGATGACGTGGTCTACAACATCATCTGCAAGAGCTGTGGAGGAGGCAGAGGAGGCTGCACGCGCTGTGGAGACAACGTGCAGTTCATTCCTAGACAGCTAGGGCTCACAGAGAGCCGGGTCTTTATAAGTGACCTGCTAGCCCACACCCAGTACACCTTTGAAATCCAGGCTGTGAATGGAGTGTCAGACCAGAGTCCCTATTCACCTCAGTATACGTCTGTCAACATCACTACTAACCAGGCTGCTCCTTCCACTGTATCTATCATGCATCAGGTCAGCCGTACCATTGACAGCATCACACTCTCATGGTCCCAGCCAGACCAGCCCAACGGTGTCATACTCGACTATGAGCTGCAGTATTATGAGAAGGACCAGACCGAGCATAATTCGTCCATGGTTAAGAGTCAAACCAACACGGCAGTCATCCGCGGCCTCAAACCCGGAGGTATCTACGTCTTCCAGGTCCGAGCCCGAACAGTGGCTGGGTTTGGGCGGTACAGCGGAAAAATGTACTTCCAGACTATGACTGAAGAGGAGTACAACACTAGCATTCAAGAGAAGCTGCCTCTCATCATTGGCTCGGCGGCTGCTGGTCTGGTCTTCCTCATTGCGGTGGTGGTCATCATCATCGTGTGCAACCGACGGGGATTCGAGAGAGCGGATTCAGAGTACACAGACAAGCTGCAGCACTACACCAGCGGCCACATGTCACCAGGAATGAAGATCTACATCGATCCGTTCACCTATGAAGACCCCAACGAAGCTGTAAGGGAGTTTGCAAAGGAAATTGACATCTCATGTGTGAAAATCGAGCAAGTCATTGGAGCAGGGGAGTTTGGAGAGGTCTGCAGTGGTAACCTGAAGCTTCCAGGGAAGAGGGAGATGTTCGTGGCCATCAAAACGCTGAAGTCAGGTTACACAGAGAAGCAAAGGCGGGACTTCCTGAGTGAAGCAAGCATCATGGGGCAGTTCGATCACCCTAATGTCATCCATTTAGAAGGAGTGGTGACAAAGAGCAGCCCGGTCATGATCATCACAGAGTTTATGGAGAACGGCTCACTGGACTCTTTCCTCAGGcaaaatgatgGCCAGTTCACTGTGATTCAGCTGGTGGGCATGTTACGAGGGATCGCCTCTGGAATGAAGTACCTTGCAGACATGAATTATGTGCACCGGGATCTGGCCGCACGCAACATCTTAGTTAACAGTAACCTCGTTTGCAAGGTGTCCGATTTCGGACTCTCTCGCTTCTTGGAGGATGACACGTCTGACCCTACATATACCAGTGCTCTGGGGGGGAAGATCCCTATTCGATGGACCGCCCCGGAGGCCATTCAGTATAGGAAGTTCACCTCTGCCAGTGATGTATGGAGCTATGGGATAGTCATGTGGGAGGTGATGTCATATGGAGAGCGACCATATTGGGACATGACCAATCAGGATGTCATCAACGCCATTGAGCAAGACTACCGGCTGCCCCCTCCGATGGACTGCCCCAGTGCCCTCCACCAGCTCATGCTGGACTGCTGGCAGAAAGACCGCAACAACAGGCCTAAGTTCAGCCAGATTGTCAACAATCTGGACAAAATGATTCGTAACCCCAACAGCCTGAAGGCCATGACTCCGCTGTCATCAGGTGTGCATTTGCCCTTGCTTGACCGCAGTGTGCCTGACTTCTCTAGCTTTAGCTCTGTGGATGATTGGCTGGACGCTATTAAGATGGGCCAGTACAAAGACAACTTTGCCAATGGCAACTTCACCAGCTTCGACCTCGTTTCCCAGATGACCATGGAGGACATTCTCCGGGTCGGAGTGACACTAGCAGGTCATCAGAAGAAGATCCTCAACAGCGTTCAGATGATGAGGGCTCAGATGAACCAGATCCAGTCGGTAGAGGTTTGACCACGTGCCCTCGATTAGACTGGGCGGAGGACAACAGGAGGAGGCGGAGAGCCAGCGTGAAGGGATGGGGCGGCCACCGCAGACCCCTAAGCCTGATTTTCCTTCTGGACCACCTAGGATACCCACCtgccccctcctcccaaacactcTCGTTCTCCATCTGTGTCATCTGACTCCCCCATTAACCCCCAGACACCCTAATGGGCTGGATTCGGGGAAAGCTGCGTCTGGAAAATATGGTCACAACACCTGATCGTTTAGTTTTAGCCACCACCAATCACAGGATGACCCTTCAGTCTGCCAGCAATAGGCCCCGCCCCTATTTCCTTCTCATTTTGTTCCTTTCCAGTTATTCTTTTTTTATcgtcttcatttttttaaagagtttttttgtaAAGAATTTTTAAAGCTATGAAAACATAAGGAATCTATATGAAATGTATAGATTGCAGACTGAATACGGTGGACTGAATTAAAAGGCTACCCTTTAAAAGGGCAATGAAGAAACAggagataaaaaaacaaacttcacCCCATGATACATGCTTCTGAGATTTTCTTTTTGAATATTTTAGGAAAATCCTGACTAGAAATAATGACTGTCTGCTCagtggatacacacacacacacacacatgggacAACCTGCGGGACCGTAATCCCTCTCCCCTTGCTGACAGTCAGGGGAAAAGTATGTGAACACCATGAAATGGCACTTCCTTCTGGCAGCTGATTCTGCCTTGAAGAAAACATGAGACTTCAGTCATTCAAACTACatcaacacaaacaaacagaggAAGGAAAAAAAATGCAGTTATCACAGTGTTGCAATTTGTGGTGCAGATTTCTCATTGCTCGGGGGGAGGAAAACAGAAATCTTTTACAGATGTCATAAAACAGCCTGCCAAAATTGAGCATCATCTCTTTGTACCTCGTCCTGTACATATCAGATGCACTTGACGTCGTGAGGTCATCAGTACAAGCCTGATGCAGTCCAACATTTAGCTTCATTTTGAGTATTAGATTGAGCTACATTGACATTTGATGGACTTTCTTTAGAGTGCGCAAACGTTTGTGACTCGAGGGGGTCATCTTTTATATTCTTCTTCCTTTTTTTGTCATGGGCTAAGATGATTTAGTTTGAAAGACGGCGTAAGATGTTCTCCCCCATAAAGAAAACTTTTTAGCTCGCTCTTTTGGTGAACCAGAGAAGGACCCCGAGTGCACGTATGGTGTGGTCCTCACATCTCCGCTCTTCTTTTATGCTCGAATCCCTGCCTTgcgagtgtgtgcatgtgtgcgtatGGAGCCCATGTGCGGTGCAAAACTATGATTTCAGGGGATGCTTGGATTTGATACACGTCGCAGATCACTGTGTCGATATGCTTATATTTTTGCCACCAAAATCATTTCTTTTAAAAGATCAACGTTTTGTAATATGGTGTTTAGGAGTTTTAATATCTGATAAAGAGTTAGAGGACATTTTCATAACAGGAAAGTCATTGTGAAGCATAGTTTTATATAAGGATGCTGTTACGACATTTTTAAACAGGTTACATTCACCGATCGGGGGGTCAAGATTAAATCTGACATCTAAAAAACAAGCTGGAGTTTCGTTAACGAATCACaaaatgtaaatgagtgtgtataggttttATTTTATACAGAGAAAGCATTCGTAATTGCGTAAGATACTTCACCTGCATTGACGtaaaactgtatataatattctgAATCAGAAACTCCCCCCGCCTGAGAGGTTTTTCTCAAAGCTGTGTTGGATTTTAGTGtacagattagttttttttttaatgtgttgttgATGGAGAGTTGCTATTGTCTGTTTATTTTGGGCTTTTCGTTTTGTACTAGGACGGGCTGAGAGATGAAGCAGCTGTAGAGATGAACAGGCCGGAGGCATCTTCATCCATGCTggagtgtatgtgtgcgtgtgtttctgAGTGTGTTTGCACATGCAGGTACATCCGTGTACCAGCATTACAGTCACTGTGGATAACAATATACTTGTCGCTCGGTCGACGAGGGGCTCTCGCTTTATTTCCATAACCTCAGTGTTGACATGCATCTGTTAAAAACACAGTACTGTGAG

Function

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005003 ephrin receptor activity molecular_function
GO:0005005 transmembrane-ephrin receptor activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-415 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axonogenesis; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in blood platelet disease. Orthologous to human EPHB2 (EPH receptor B2).

Ensembl:

ensembl_id ENSDART00000192311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006868 lncRNA upstream 421883 27738489 ~ 27744282 (+) True XLOC_003507
TCONS_00008623 lncRNA upstream 434990 27729240 ~ 27731175 (+) True XLOC_003506
TCONS_00008403 lncRNA upstream 516583 27625084 ~ 27649582 (+) False XLOC_003505
TCONS_00006877 lncRNA downstream 21279 28442373 ~ 28446862 (+) False XLOC_003511
TCONS_00006878 lncRNA downstream 21279 28442373 ~ 28447433 (+) False XLOC_003511
TCONS_00008625 lncRNA downstream 25219 28446313 ~ 28447071 (+) True XLOC_003511
TCONS_00006880 lncRNA downstream 96468 28517562 ~ 28519901 (+) False XLOC_003513
TCONS_00006881 lncRNA downstream 96544 28517638 ~ 28520764 (+) False XLOC_003513
TCONS_00006872 mRNA upstream 40026 28107632 ~ 28126139 (+) False XLOC_003509
TCONS_00006873 mRNA upstream 43711 28109403 ~ 28122454 (+) True XLOC_003509
TCONS_00006870 mRNA upstream 155994 27969045 ~ 28010171 (+) False XLOC_003508
TCONS_00006869 mRNA upstream 168391 27968834 ~ 27997774 (+) False XLOC_003508
TCONS_00006871 mRNA upstream 176771 27973055 ~ 27989394 (+) True XLOC_003508
TCONS_00006879 mRNA downstream 55204 28476298 ~ 28514978 (+) True XLOC_003512
TCONS_00006888 mRNA downstream 196470 28617564 ~ 28619811 (+) True XLOC_003515
TCONS_00006889 mRNA downstream 199589 28620683 ~ 28631342 (+) True XLOC_003516
TCONS_00006891 mRNA downstream 1116662 29537756 ~ 29540033 (+) True XLOC_003522
TCONS_00006894 mRNA downstream 1250567 29671661 ~ 29677714 (+) False XLOC_003525
TCONS_00006865 other upstream 645592 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 1551578 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 2088104 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 2683195 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 2687747 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006890 other downstream 931007 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 1145653 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 2550940 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 2553677 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 2594425 31015519 ~ 31024572 (+) True XLOC_003549

Expression Profile

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