RNA id: TU229286


Basic Information

Item Value
RNA id TU229286
length 1898
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G169095
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27291945 ~ 27297777 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCTCTCATCTTTTATTCTGTTAGGTTGTCATGTAAATAAATTGGACAATTTATTGACCGCCCCTCAGACGCAGGACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATGTTTGCACCTCTGTAAAATGGAGATGAATCAACTCACGATTTAGCGTCAAatcaaaaaagttttaaaaaattgCTTTAATCGGACTAAATTAATGTCATTATAATTTGATATTATCTGGATCCCAAAGAACTGTAAAAAAGTAGCGCTGTAATTACATGTACATTACGTTAGTTAATCTCTAAAACTGATACTTAAACAGAACATTAATATGAAGCTCTGAACTATCGGCAGCTCAGCAGCCATTCCGATCCGAGCGCCATTTTGAGATCCTATTGACCTTCTTTGTTCAGCTGTAACTCTAATGGACGATAACGTTACTGGAAATGTTGAGTCATTGCTATCGTTATCATTTGTTAGCGTAGCTAAGCCAAATAGAAATCGACGACAAAGTGATTGACGCTAAAACTCGTAGCAACCTGTATACATTGAGTAATGTAGCTTAACTGCTTGATTGTACTTTAAGAACGTCAATTTGAGGCATAGTTACCGTCTGCTACAATTCTCTTATGCGACTGTAACGTTAGGAAGGTTAAAACCATGTCACTGGTCATCAAACAAGCAACTAAAAACATTAACTGTATACACAATTCACATTTTAGAATACTATAGCtcgaaaaaaagagaaatgtgtACTCACTTTTAAGATACGCAGTTAAATATGTTATATTGTGCTGGTACAGCGATTCTTCTTTCGGCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229225 lncRNA upstream 210284 27038854 ~ 27081661 (+) True G169060
TU229181 lncRNA upstream 331306 26957695 ~ 26960639 (+) False G169027
TU229179 lncRNA upstream 331637 26957695 ~ 26960308 (+) True G169027
TU229164 lncRNA upstream 452388 26838992 ~ 26839557 (+) True G169018
TU229156 lncRNA upstream 462261 26827103 ~ 26829684 (+) True G169011
TU229404 lncRNA downstream 127376 27425153 ~ 27426322 (+) True G169157
XR_005636380.1 lncRNA downstream 178508 27476285 ~ 27477131 (+) True LOC120543667
TU229441 lncRNA downstream 232159 27529936 ~ 27531302 (+) False shpk
TU229468 lncRNA downstream 402341 27700118 ~ 27701522 (+) True G169209
TU229477 lncRNA downstream 415298 27713075 ~ 27713796 (+) True G169215
XM_039776722.1 mRNA upstream 3512 27136017 ~ 27288433 (+) True abr
XM_039776724.1 mRNA upstream 4600 27164737 ~ 27287345 (+) False abr
XM_039776723.1 mRNA upstream 4600 27192302 ~ 27287345 (+) False abr
XM_039776725.1 mRNA upstream 4600 27205825 ~ 27287345 (+) False abr
XM_039776726.1 mRNA upstream 4600 27273610 ~ 27287345 (+) False abr
XM_039776735.1 mRNA downstream 260 27298037 ~ 27301502 (+) False cenpv
XM_039776737.1 mRNA downstream 278 27298055 ~ 27301502 (+) False cenpv
XM_039776736.1 mRNA downstream 2060 27299837 ~ 27301502 (+) True cenpv
XM_039776727.1 mRNA downstream 16777 27314554 ~ 27373600 (+) True ncor1
XM_039776728.1 mRNA downstream 16777 27314554 ~ 27373600 (+) False ncor1
unassigned_transcript_951 other upstream 12224 27279649 ~ 27279721 (+) True trnav-aac_10
TU229197 other upstream 326905 26962206 ~ 26965040 (+) False G169042
TU229198 other upstream 326905 26963741 ~ 26965040 (+) True G169042
TU228996 other upstream 723450 26564689 ~ 26568495 (+) False LOC120544064
TU228425 other upstream 2876176 24410353 ~ 24415769 (+) False gab3
TU230254 other downstream 2648097 29945874 ~ 29971107 (+) True G169789
XR_005636422.1 other downstream 2713557 30011334 ~ 30112211 (+) False uvrag
TU230294 other downstream 2830755 30128532 ~ 30128932 (+) True G169814
TU230749 other downstream 3888160 31185937 ~ 31218284 (+) True G170156
XR_005636475.1 other downstream 4182535 31480312 ~ 31509393 (+) True LOC120544216

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059317 True 1650 mRNA 0.49 2 NC_007116.7 42064144 ~ 42068490 (+)