RNA id: TU229900


Basic Information

Item Value
RNA id TU229900
length 713
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G169524
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28699821 ~ 28704621 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGTGATCCCTTTTCATGTGTCAACCCCATCAGTATAAATAGTCTGGGAAAGGAAGAGGGGGAGCAGAAGGGACATAATGAGTGAGGAGAAAGTGCATCTTTTTGGGTTGTTTTTGTGACCAATCTTTAGATTTAAGCGTGTGAGAGACATCGACTAACAGCGCGGGGAGGTGCAACAGAGTGCAGAGGCAGGCCGTGCTGCGCAGCGTCTCAGACTGCAGCGAGGAGAAAGCTGACCACAAATATGCCCGACTGTGGCCGGCGGGCTCCTGACCGACTGCTCTCCTCCCTTGCCATGTGGCCACAGTGGGCGGGGGAGCGCTTTTTCCATTCCACTTCCTTTCCCTGCCACACAGAAAGGAAACGTACTGCAAATGTCTGGGAAACCATGTAGAGCTGGCTGCACGGGAGGGACTTCAAAGCTCGTACAAGAGAATAACATCCACAAGAGATGGGGAGTGTGTGCACTAGTATTTTTCCTGTTGGTAGCTAGTCGAACACCCAACTCTGTAAGACCTTACATCGTCATTCCATTGACAAGCTTGGAGGCTACTGTTTTGAAGTGAGAAATAAAATACTATCAATCCGACTCTTGAGTCGTGTTGATTAAAGGAACCCTGGAGAGCTGTTGACCACTATGCTATGGAGCAATGTTTTTATGAGCTTCCTCCTGTATTCCCATCACAACTAAAGCCAGAGGGGCACACCAATC

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229804 lncRNA downstream 300641 28396980 ~ 28399180 (-) True G169447
TU229767 lncRNA downstream 342444 28357011 ~ 28357377 (-) True G169417
TU229750 lncRNA downstream 368850 28330652 ~ 28330971 (-) True G169402
TU229747 lncRNA downstream 464872 28234590 ~ 28234949 (-) True G169399
TU229726 lncRNA downstream 496068 28163135 ~ 28203753 (-) True G169387
TU229929 lncRNA upstream 48654 28753275 ~ 28755551 (-) True G169550
TU229931 lncRNA upstream 52922 28757543 ~ 28761645 (-) True G169551
TU229934 lncRNA upstream 53161 28757782 ~ 28761645 (-) False G169551
TU229930 lncRNA upstream 53513 28758134 ~ 28761645 (-) False G169551
TU230020 lncRNA upstream 139803 28844424 ~ 28849113 (-) True G169612
XM_039778344.1 mRNA downstream 35810 28654877 ~ 28664011 (-) True ube2g1a
XM_039826523.1 mRNA downstream 46337 28635713 ~ 28653484 (-) True ankfy1
XM_039826521.1 mRNA downstream 67002 28594424 ~ 28632819 (-) True zzef1
XM_039777281.1 mRNA downstream 160693 28475913 ~ 28539128 (-) True atp2a3
XM_039778141.1 mRNA downstream 229310 28399367 ~ 28470511 (-) False camkk1a
XM_039778676.1 mRNA upstream 70192 28774813 ~ 28782861 (-) True ruvbl2
XM_039778637.1 mRNA upstream 80481 28785102 ~ 28791118 (-) True ftr83
XM_039778674.1 mRNA upstream 99757 28804378 ~ 28808441 (-) True atp5l
XM_039776705.1 mRNA upstream 106762 28811383 ~ 28815558 (-) False pdzd3b
XM_039776704.1 mRNA upstream 106762 28811383 ~ 28815558 (-) True pdzd3b
TU229887 other downstream 35770 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 352331 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 476571 28217243 ~ 28223250 (-) True srrm3
XR_005636427.1 other downstream 672044 27930539 ~ 28027777 (-) False LOC120544024
XR_005636444.1 other downstream 969673 27719805 ~ 27730148 (-) False gusb
TU229954 other upstream 99764 28804385 ~ 28808430 (-) False atp5l
TU230221 other upstream 1057828 29762449 ~ 29796427 (-) True LOC120544028
XR_005636389.1 other upstream 1178185 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 1241047 29945668 ~ 29948932 (-) False map6a
TU230433 other upstream 1602228 30306849 ~ 30310587 (-) False LOC120543993

Expression Profile