RNA id: TU229930


Basic Information

Item Value
RNA id TU229930
length 3512
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G169551
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28757543 ~ 28761645 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTACAGACATGTACATTTTCTATCAACCCCCCCCACCTCCGAGGGAGCATCACAGTTCAGTTCTAGAATAATATCCTTTGATTCCTCTACACTTCTCTTGTATTGACTtgctctaaaaataaaaaataacctcTGTTTTCTGCTCAACTTCAGAAATAGGTTTCTTTATACATGATTCTTGTATGACAAGAAATAGCACGTTCTCAATACATCACTTCAGTGATTTTTAACATAGAATTACTCAATACAACGGACTTATATACACCTAAAGGATTGGTGCTGCTAAATCAACTAAATTTGGCAAAGTGAAACTCAATTCATGACCCATCTGACCAGAGCCAACGTCCCTTCTCATAACAGATGACAATATGTCAGCAACGTACTGTACTGCGAGCACGAAGCGACAGACCTCGGTGCCAGAGGCTGTGAATTTGATGCTAGGCTATGGTTCAAATAAATCCCTGAACATTACGTGTGCAAAATGGTTGTTgttctaaaaacaaaacaaaaaaaaaaacatttactaaGAGCTACAAAATTGAATGCAAAAGTATTGCACCCTAAACATGAGAGCGATACGacgtctttaaaccaatcgcattGCACTTCCTtttgtgtgtaatatgtgtgaGATGTCCAATTCAAGATCACAGTAAACAGGATGAATCGTAGTGATGTAAAAAGGTACTGTGTTGTTTCATTGTGATACAAAAGGATGAACAAAACAGGCATTTCTAAACCCAATGACATCCAACAAAGTGTAGTATACACAAACCTTAAACTTCCCTTTATAGATTATTCTCCATTATggtaacaaacaaataaatacattgcaTCCAAGCCATCATTTACAATATATTAGAGTTGCTGCGTGATAtagctatatatatttatctctCTATTGtagttatatttatatatatataaaaaaaactcatttggtaacattaagaaaaagaaaatcaataaaaaggaaGGTACGAAGCTTAATTCATTAAGAAAATGTAGGTGTGTAAACACGTCAGGTTGGACAGAATCACATTCAGAGAGCTCCACGCACTTCAGGAGAGAAGCTAAAGCTAATGATCTGGCAACAAGGACACAGCCCACACAGCACCCCCCACACAGCCAGCAAGCCGTGAGTCACGCTCAAACATCACTGCTACAGGAACCACCTCAACGTTTCCCTTTATTCCTCCGCTAAGGTCATTCCATCCTCCTCCTTCTGTGTTTTCTTGGAGGTCTGCAAAGGTCTTTATGCACCAGTTTGAAAACCTTTGACTCCATTAGTGGCTTATAGGTTTTAGTAAAATTGTTTCCACCAGGTAATTTACAACAAAACGATCCTTCAGGGTAGCTTCTAATGAAGCTTTTGCCTAAATCTCTGTATACACAAGCAACTAGCTAtagcagacttttttttttttcttctttgtgggATTTTCACATGAATTATTACTAATTACAAATACGatgcacatactgtaattaAAGCATAGAGTACTGAAACCAATTCCCGGTTTTGTTGCACTTCTATTACATATTTAAATCTGTATGTCATTCTCTGGTACAGGTATGGAAGGGGACTCAGTTTTTCAGCTCCTTCTGTGACATCTGAGGAAATTCTGGTCTGGTTTCAAAGGGGGATTCCTCTCTTATCCGTTATCAACGATAAGAGCCTGCCATCAGTCTAACCAGGGGCGGAAGGATTGCCTATTCCTGTCTGGGATTTTGATTTCCCTCAGTAATAAACTGATGACCGGGACTCCAGCTCTTCTCAAAGGTCCTTTCTTCTAATGGTGGAATGGGATATCTACAATTGCGCGGGGGAAAGGTCTCTTTTCACAATGCCTGGTATTGTAACCAGGGGGGGACAGGACTGGAATCCATCATTAAAATcgactctgtctctgtgtgggtgATGTGCCCAGAAATTCAAAACCAACCATCAGAGAGCTAAACCCCCTTTAAAGAGAAACCTGGCTCACTGATAAGGCAGTGTGGATTAAAAGGTTGGTTTCCtcaaaaaaatgtttgtattgCTTCTTgtgtacacaaaaacacaggtgttactccttaaaagtaaaaaaaagtagcaTTTCATTTACTTTTGGGAAAAGCATGtacattataaattataaaatatatcGTCCAGTGTCCGCTTTAAATCAGATTGCATCATCGTCCTTCTGAAACAATCATAGGCAGTATGACCTCCAGTTTCAAAtccaacacagaaaaaaagaataaaaaaagaaatcacaagaAATCTTGTGAAAAATAATGTGCAGAAATCTGCCATCTCTGTCCTGTTCGCTGGCACTGTCAATGCTGATGTAagtgctaaaagctaaaaaaaaaaaaaaacacacacacacacacacacacacacgtggggGTCAAAAGAAGCAGCTGTTGATGTGAAAGCTCCAATTTTTAAGGCTGATTCACTGACCTTTAGAAAGTAACAGTTTTTTGGCTCTCGGTTTGACggctatgtttacatgcacagctGAACGCCGATCGATTATGAGAATACTGCATTCATCATGTAAACAATGTATTTACGTTTGAAGTTCATGTTGTTAGCACTGCCGTTATGATGCTTAGAGAATGATATTCCTGCAGCAAATTTTAACAAGTTGCATCACCTGCTCCACAAAACTTGAATTTTACAGCCTCTGTCAGGTTACAGGCTCCAAGTGTTGAAAGCCAGGGCAGAATGAATTGTGGACCATTTTAACGGGAGCGACAGAGACACCGATGGAGCTTTATGACTGCAGTTTACAAATGTCGACGCAGCTCCTGCTGTCTAGCAAATGCAAACAGCTTAATCAAAGTAATTTCATAGCCGACGGCTGAATtatagtgtgcatgtaaacatagtcagtgATGAAGTCATGAGTGTCGTTGGTGGTCAGTGCAAAGTCTGAAGGAATGTAATGACGCTATGGCACTTGGTGCAGATTGACAGCTGATGTAacttacagacagacatagggacagacagacagacatagggACAGACCGTTGGACagacaagcagacagacagggcagGTTCATGGTCAGCATTCAGTAGTATGACATCAGGAGTCGGAGGGGTCACGGGGGATTTTGCCACCCCACCTCCTCCCTGGAAGGTTCAGTGGATTCTCACAGGCAGAGGTGAAGAGGACACCAGCTGTCAGCCGGCCAGCTTCAGCACACCGCTGTGCGCTGTTCTCACCGACCTGTGATTTGGAGGCGTTTCAAGGAGGGGCAAGACGCTCCCTCGTTCCAGTTCTGAGCAGCCTCCACGAGTGTGTGGAAAGGAAGAGCAGCAGGAAGCCGacaggaggatgaggaggatgatGAGGACGAGGATGATCGTGGCGGTGGCGGCGGTGAAGAGAACACGGGCGTGGTTTTAAAGAAGTGGATCGGCTGCCCTCGCTTTTTGTCTCCAATTTGTCGTCCTCATTGAGTTTGGTTGCCTCTTCAGATGGCTCCTCATGTGGCTGTCACctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229929 lncRNA downstream 2583 28753275 ~ 28755551 (-) True G169550
TU229900 lncRNA downstream 53513 28699821 ~ 28704621 (-) True G169524
TU229804 lncRNA downstream 358954 28396980 ~ 28399180 (-) True G169447
TU229767 lncRNA downstream 400757 28357011 ~ 28357377 (-) True G169417
TU229750 lncRNA downstream 427163 28330652 ~ 28330971 (-) True G169402
TU230020 lncRNA upstream 82779 28844424 ~ 28849113 (-) True G169612
TU230030 lncRNA upstream 103836 28865481 ~ 28867088 (-) True G169620
TU230051 lncRNA upstream 184665 28946310 ~ 28946656 (-) True G169640
TU230059 lncRNA upstream 237835 28999480 ~ 28999737 (-) True G169648
TU230092 lncRNA upstream 387439 29149084 ~ 29150478 (-) True G169678
XM_039778344.1 mRNA downstream 94123 28654877 ~ 28664011 (-) True ube2g1a
XM_039826523.1 mRNA downstream 104650 28635713 ~ 28653484 (-) True ankfy1
XM_039826521.1 mRNA downstream 125315 28594424 ~ 28632819 (-) True zzef1
XM_039777281.1 mRNA downstream 219006 28475913 ~ 28539128 (-) True atp2a3
XM_039778140.1 mRNA downstream 287623 28399367 ~ 28470511 (-) True camkk1a
XM_039778676.1 mRNA upstream 13168 28774813 ~ 28782861 (-) True ruvbl2
XM_039778637.1 mRNA upstream 23457 28785102 ~ 28791118 (-) True ftr83
XM_039778674.1 mRNA upstream 42733 28804378 ~ 28808441 (-) True atp5l
XM_039776705.1 mRNA upstream 49738 28811383 ~ 28815558 (-) False pdzd3b
XM_039776704.1 mRNA upstream 49738 28811383 ~ 28815558 (-) True pdzd3b
TU229887 other downstream 94083 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 410644 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 534884 28217243 ~ 28223250 (-) True srrm3
XR_005636427.1 other downstream 730357 27930539 ~ 28027777 (-) False LOC120544024
XR_005636444.1 other downstream 1027986 27719805 ~ 27730148 (-) False gusb
TU229954 other upstream 42740 28804385 ~ 28808430 (-) False atp5l
TU230221 other upstream 1000804 29762449 ~ 29796427 (-) True LOC120544028
XR_005636389.1 other upstream 1121161 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 1184023 29945668 ~ 29948932 (-) False map6a
TU230433 other upstream 1545204 30306849 ~ 30310587 (-) False LOC120543993

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1026232 True 1282 lncRNA 0.34 1 NC_048574.1 52705978 ~ 52707259 (-)