RNA id: TU230020


Basic Information

Item Value
RNA id TU230020
length 534
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G169612
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28844424 ~ 28849113 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGGGCTGAGATGCCGATGAGCAGGAGCCATTTCTGCTTGGCGTCAGTGCGGTAGTTGATAATCTGGCAGCCTGCCAGGCTGGAGTGGCGGTCGAAGACTTTCACAGGCTGCGAGTCTCCCTCCATGCTCCAGTGGTAGACGGCATTGTCAGTCACAAGTGCAACTGTGTTAAGGGAGATCCACTTCCAGAAGGTAACATCGTCCGTCATGGTATGTGCCTTCATCTTGCTTTTCATCTCGATGTTGAAGATCTGAAGGGTTTTGGCGGCTACTTTAAGTGCAATGACTTTGCTGGCTGGATTCATGATGGCGCTGTCGGCTGAGATGGGCCTGCGGATAGGTGTATTTGGGTCTGCCATGTCAATGATCACCACCTGAGTCTGCTCGCCCACCTTCTCCCGAATACAGATGAACTTATCCGACTCCATGGTTAGGGTGCTGAAGCCTATGTTGGATGGATTGATCCCTAAATTTTGGAGCTAGACacaaaaaaaggagggaaaaaggGAATGTTAGGTTGAACAGAAATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229931 lncRNA downstream 82779 28757543 ~ 28761645 (-) True G169551
TU229934 lncRNA downstream 82779 28757782 ~ 28761645 (-) False G169551
TU229930 lncRNA downstream 82779 28758134 ~ 28761645 (-) False G169551
TU229929 lncRNA downstream 88873 28753275 ~ 28755551 (-) True G169550
TU229900 lncRNA downstream 139803 28699821 ~ 28704621 (-) True G169524
TU230030 lncRNA upstream 16368 28865481 ~ 28867088 (-) True G169620
TU230051 lncRNA upstream 97197 28946310 ~ 28946656 (-) True G169640
TU230059 lncRNA upstream 150367 28999480 ~ 28999737 (-) True G169648
TU230092 lncRNA upstream 299971 29149084 ~ 29150478 (-) True G169678
XR_005636547.1 lncRNA upstream 819269 29668382 ~ 29678865 (-) True LOC120544741
XM_039776705.1 mRNA downstream 28866 28811383 ~ 28815558 (-) False pdzd3b
XM_039776704.1 mRNA downstream 28866 28811383 ~ 28815558 (-) True pdzd3b
XM_039778674.1 mRNA downstream 35983 28804378 ~ 28808441 (-) True atp5l
XM_039778637.1 mRNA downstream 53306 28785102 ~ 28791118 (-) True ftr83
XM_039778676.1 mRNA downstream 61563 28774813 ~ 28782861 (-) True ruvbl2
XM_039777812.1 mRNA upstream 26877 28875990 ~ 28877885 (-) True ptrh2
XM_039777813.1 mRNA upstream 26877 28875990 ~ 28877747 (-) False ptrh2
XM_039778212.1 mRNA upstream 122355 28971468 ~ 28977378 (-) False rnft1
XM_039778210.1 mRNA upstream 122355 28971468 ~ 28977378 (-) True rnft1
XM_039777713.1 mRNA upstream 858094 29707207 ~ 29748583 (-) True cxadr
TU229954 other downstream 35994 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 180373 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 496934 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 621174 28217243 ~ 28223250 (-) True srrm3
XR_005636427.1 other downstream 816647 27930539 ~ 28027777 (-) False LOC120544024
TU230221 other upstream 913336 29762449 ~ 29796427 (-) True LOC120544028
XR_005636389.1 other upstream 1033693 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 1096555 29945668 ~ 29948932 (-) False map6a
TU230433 other upstream 1457736 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 1562138 30411251 ~ 30414693 (-) False si:ch73-1a9.3

Expression Profile