RNA id: TU230092



Basic Information


Item Value
RNA id TU230092
length 437
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G169678
representative True

Chromosome Information


Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 29149084 ~ 29150478 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTTAAATGTTCAGTAAGCCAGTGTGCACAATACCACAAGACTATTTGAAGGATTTAGGAGACCTCTGGAGCTCTCAAACTGCTAAGGGCATTAGCTAAGTCGAAAGAAATTAGGATAAATAGTTTTTATTCTTACGTTTGTGGGAGTAAAAGTGGAGGTTGTTTACCTTTTAGTCCAAAATGCCACGGTTAGCAGTTCGATACAGGCCCTGGTCTCCTCTCAGCCACTCCTCCTTGTCCCAATAaATATGTGTGTCTATAGTCCATGAAGGGTGGAGCTGATGATGTCCATGAAGGTGGCCTCTACACAGTAACAGAGCTGGACATCAGGGTCAGCTCCACCGAGTTCCTCTGCTGTTCTCTGGGGTAAAGTCAGCTTGGAGGAACCTCCTCCTGAAGCCACAGCCCCCTGAGGCTTCTCCTTCAGATACTGCAGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230059 lncRNA downstream 149347 28999480 ~ 28999737 (-) True G169648
TU230051 lncRNA downstream 202428 28946310 ~ 28946656 (-) True G169640
TU230030 lncRNA downstream 281996 28865481 ~ 28867088 (-) True G169620
TU230020 lncRNA downstream 299971 28844424 ~ 28849113 (-) True G169612
TU229934 lncRNA downstream 387439 28757782 ~ 28761645 (-) False G169551
XR_005636547.1 lncRNA upstream 517904 29668382 ~ 29678865 (-) True LOC120544741
TU230211 lncRNA upstream 524938 29675416 ~ 29678834 (-) False LOC120544741
XR_005636429.1 lncRNA upstream 612618 29763096 ~ 29767576 (-) False LOC120544028
XR_005636430.1 lncRNA upstream 612618 29763096 ~ 29767544 (-) False LOC120544028
XR_005636431.1 lncRNA upstream 612817 29763295 ~ 29767540 (-) False LOC120544028
XM_039778212.1 mRNA downstream 171706 28971468 ~ 28977378 (-) False rnft1
XM_039778210.1 mRNA downstream 171706 28971468 ~ 28977378 (-) True rnft1
XM_039777812.1 mRNA downstream 271199 28875990 ~ 28877885 (-) True ptrh2
XM_039777813.1 mRNA downstream 271337 28875990 ~ 28877747 (-) False ptrh2
XM_039776704.1 mRNA downstream 333526 28811383 ~ 28815558 (-) True pdzd3b
XM_039777713.1 mRNA upstream 556729 29707207 ~ 29748583 (-) True cxadr
XM_039777527.1 mRNA upstream 605249 29755727 ~ 29761675 (-) False btg3
XM_039777528.1 mRNA upstream 605249 29755727 ~ 29761633 (-) False btg3
XM_039777529.1 mRNA upstream 605249 29755727 ~ 29760295 (-) True btg3
XM_039778069.1 mRNA upstream 656367 29806845 ~ 29826242 (-) False c16h21orf91
TU229954 other downstream 340654 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 485033 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 801594 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 925834 28217243 ~ 28223250 (-) True srrm3
XR_005636427.1 other downstream 1121307 27930539 ~ 28027777 (-) False LOC120544024
TU230221 other upstream 611971 29762449 ~ 29796427 (-) True LOC120544028
XR_005636389.1 other upstream 732328 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 795190 29945668 ~ 29948932 (-) False map6a
TU230433 other upstream 1156371 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 1260773 30411251 ~ 30414693 (-) False si:ch73-1a9.3

Expression Profile