RNA id: XM_039777965.1


Basic Information

Item Value
RNA id XM_039777965.1
length 2084
RNA type mRNA
GC content 0.53
exon number 5
gene id map6a
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 29945668 ~ 29971080 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCTGCTCTGTGTCTCTGGGATGCTGAGCAGGCGGGCGGGGCTGTTTTTCGTTGCAGTGCCCTGCCGTGGAGTGATGTAGCAAGTACGTACAGGACCGAGCAGGCACAGAGGGAAGCAGAGCAAACGTCAGTACGGTCGTTGTTTTTATAAAATCGTTCAAATCTGTGTAGCCTCTTTCAGACATAACATGGATTTACTGAATAACCTAATCTAAAGTCAACAGGGTTGGAGCCATCCGTGCTGTCTGATACACGGACATCTTGTTTCTGTCATATATCAGTACCGGAGCGTAGAGACTATTTCTCTTCATTTTGGACCCGGTGCTAGTTGTACTGTAGTGGGGCTCTTTACGGCTCACCATGGCGTGGCCCTGTATCAGCAGGGCGTGCTGCATGGCCCGCTTCTGGAACCAGCTGGACAAGGCTGACATTGCGGTGCCTTTGGTCTTCACCAAGTACACGGACGCCTCAGAGATGCAGCACATCCAGCTGCAGCCGCCGCTCCACCCTCCCCAGGCCCGGGTCGCCATAGAAACACAGCCGTCTCGCGCAGAGAGCCGCACCGCGACAGCGGCACGGGCGCCGCGAAGGTGTGTCTCCGAAGAGCGCGTGTGCAGCTCTGTGATGCGCGAGGACTTTAAGCACTGGAACGTGCCACGCGAGCCGAGCTGTAAACCCAAGAACGAGTACCACGAACCGGAAACACCGTTCAACAGCAAGACCCAGTACCAGAAGGACTACAAACCCTGGCCCATCCCGAAAAGGCACGACCATCCCTGGATACCTAAACAGCCTCCCCCCACCTCCGCCGGCGATGACCGGGCTCCGGACCGGTCCAGGCACTCCAAACAGCTGGCGGATGCGGACAGCGGTGTGGAGAAGAGCGCTATTGCAGACAAGGTGCAGGAGAAAGACCTCCTGCAGGGgcaggagaggaaaaagaagtCCAGTAAACAGGAGGGGCAGAAGAAAGTTGTCCTGAAGGTGGAAGGAGAGGGCAGAGGGAGGGCGGAGGCGGATGCTGTGAACAGGCAGATCAAAGAGGAGATCACAGGCGACAGCTCCTACAAGACTGAGTACAAGGCTTACAGAGACGTGAAGCCAGCGAAGATGATCCGGGCCAAGTCCCAGTACCTGCCCCCAGCTGACAGGCCCAGTCTAGAGACCAGCTACAGTGCTACCTTCAAGGGCCAAGCTCCGCTGCGCCCTGCTGACAACAAGGCCGTGGATAGGAGGAGGATACGCAGTTTGTACAGCGAGCCTTACATAGACCCCATCAACCAAGTTGACAGGTATAGTGTCCTTCGCTCTAAACCCAAAAGGCCTGGAGCCTGGGCGGCAGGCCAGGCCAAGCCAGTGAAGAAAGCCAAAGATAAGCAGAGCGCCGCGCTGAGGGGATCCAAGAAGACAACCACGGAGAAGGAGCCCGAGAACCGGCCAGCGGCAGGGGACAAGGAGAAAAGTAAAGAGATGAACAACAAACTGGCTGAGGCAAAAGAGGTTGTGCTAAAACAGTACCACTACATACAACTCTGCCAGCCAATCCGAGATATTGGCTGGGTGCAGACTCTAAAGCAACACCTGTGGGGCTGTGCACTACCCAACCCAAGAGATGCTAAGGACGAGGTTCTCGGACCCAGTCATCATCATTCCCAGGGTGCTGCTGGAGGAGAGCCACCTCCACCGCTGGAAAGACCCGAACCTCGGAAGAGCAGCGGAGTCGTACGCTTTGCCCTAGATGTCAACCAGACTGAGTAGTTCTGCCTGCCGAGGCCGATATCTTAAACCGACTGATGCTCTGTACTGTAAATAGCTAGTATTTGCAACTAAGTTGGATTATGACAAaagaggtgaaaaaaaaaaaaagttccgcTATCCAAGAGGCAGCCCACACATTTGAAACACGCATGTTTAACCCATGGAATTATCACAAAGGTGCTATATCATTTTCTGGTTTCATgccatttgttttcaaagaatATGCCAATATCATTAGAAATACCACACCATAAAGTGCTTATACTACAATTACAAAAGAAACTGTACTGTTTTagtgtaaataaataattatactTGCAGATTA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636545.1 lncRNA downstream 19606 29925067 ~ 29926453 (-) True LOC120544726
TU230223 lncRNA downstream 156509 29778692 ~ 29789550 (-) True G169766
XR_005636429.1 lncRNA downstream 178483 29763096 ~ 29767576 (-) False LOC120544028
TU230408 lncRNA upstream 75061 30046141 ~ 30115419 (-) True G169905
TU230416 lncRNA upstream 293470 30264550 ~ 30266434 (-) True G169912
TU230427 lncRNA upstream 312000 30283080 ~ 30284166 (-) False ei24
TU230425 lncRNA upstream 312043 30283123 ~ 30284402 (-) False ei24
TU230426 lncRNA upstream 312043 30283123 ~ 30284166 (-) False ei24
XM_039778678.1 mRNA downstream 22547 29920887 ~ 29923512 (-) True LOC120544725
XM_039776864.1 mRNA downstream 33392 29904528 ~ 29912667 (-) False zbtb21
XM_039776865.1 mRNA downstream 35479 29904528 ~ 29910580 (-) True zbtb21
XM_039776867.1 mRNA downstream 44122 29882806 ~ 29901937 (-) False LOC120543707
XM_039776866.1 mRNA downstream 44122 29882807 ~ 29901937 (-) True LOC120543707
XM_039778453.1 mRNA upstream 243459 30214539 ~ 30228165 (-) True wnt11
XM_039777451.1 mRNA upstream 268026 30239106 ~ 30254350 (-) False si:dkey-250d21.1
XM_039777450.1 mRNA upstream 268026 30239106 ~ 30254350 (-) True si:dkey-250d21.1
XM_039777452.1 mRNA upstream 284981 30256061 ~ 30261194 (-) False thap12a
XM_039777453.1 mRNA upstream 284981 30256061 ~ 30260963 (-) True thap12a
XR_005636389.1 other downstream 44122 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 149632 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1137629 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 1282008 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 1598569 28314437 ~ 28347490 (-) False LOC120575713
TU230433 other upstream 335769 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 440171 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 766975 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 857987 30829067 ~ 30829943 (-) False LOC120543890
TU230602 other upstream 878239 30849319 ~ 30851013 (-) False LOC120543892

Expression Profile