RNA id: XM_039777458.1


Basic Information

Item Value
RNA id XM_039777458.1
length 3434
RNA type mRNA
GC content 0.45
exon number 11
gene id ei24
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30283080 ~ 30294530 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGACCACACTAGTAGCTACATGATTAATGTGGGTCTTCACATAGCTCAACGTAAATTTGTATGGGAAGCCAGACCGAGCCAGCAAACGCTGACAGTTCGCTATCACCTATTCGAGCTAACGTTAACCCACTGAGTCAGCTGCTAATGTTAACTTGCACAAATAGTAACGTTCTTGTCAAGAGAGACACCGGGCTGAATTAACGTTTCACTTTGACCTTGTTACAAAATGTGTATAACTGACCGACACCCAAGAGGTGACGTTGCTGTTTTATAACGTTACCATTGGGGTTGGGCATCTTTTGAtttgaacaattctgattcAAATTCCGATCCTTCTtttcgattctcgattccgattatTTGAGGGGTGGCGTTGAAACCGAAACGGGCCTCATGATGACATAACATCAGCTAATAACATCAGATCCTGTTTGTCCCCCTTTTTAACACTATTTATGAAATTGGAAAGTTtgtgtcctgttttttttccctcttgtGATCTACTTTAAACTTCTAAAGGACCAAATATGTTTTCATAatatcatagtatagtgtcaAGTTTGATTTGTATCATGTATGCACATGAAAAACTACCAATTTTGGAAATGCCAAAAGCACAGGCTGACATGGGTGGAAAAAGTAACTGGGTGAGCCCCTCCCTGCAATGAGAGCTGACGACCAGGTCACCAGCCCCCCCTCCTTCTGCAGTTGATGGATCTGCAGCTGGTTCAGAGATGACAGACAGCGTCAGGGCCTTCCTCCGCAATGTTGCGACGGGGATCAAAGACTCCATATTGGGGATTGGAACAATTTCCAAGCTGGATGCCCGCATCCAGCAGAAAAGGGAAGAGCAGCGGAGGAGAAGGGCCAGCGGGGCGCTGGCACAGAGACGGGCACAGAGTGAGGAGCGCAAACCGGACAAtGACCCCAAAGTAGCCAGCAGGATTTTTCAGTGCTGTGCCTGGAATGGAGGAGTGTTCTGGCTCAGTCTGTTTCTCTTCTACCGGGTGTTTATACCACTGCTGCAGACTCTCACGGCAAAAATCATCGGTGACCCCTCCCTCCACGGCAGTGTGTGGTCCTGGTTAGAGTTCATCCTGACCTCCGTCTTCAGCGCTCTCTGGGTTCTCCCTCTGTTCGTCCTCAGCAAGATAGTCAACGCCATCTGGTTCCAGGATATAGCTGACCTAGCGTTTGAAGTGTCTGGATGTAAAGCGCAGTCGTTCCCCAGCGTCAGTAAGATCATCGCAGACATGCTCTTTAACCTTCTTCTCCAGGCCCTCTTCCTCATTCAGGGCATGTTTGTTAGCCTCTTCCCCATCGATGCCATTGGACAGATGGTTAGCCTCCTCCACATGTCTCTGCTCTACTCCCTGTACTGCTTTGAGTATCGCTGGTTCAACCATGGCGTTGAGATGCACCAACGGCTGTCCAACATCGAGAGGAACTGGCCCTATTACTTTGGCTTTGGTTTACCCATGGCGCTGCTGACCTCCCTGCCCTCCTCATACATCATCAGTGGCTGCTTGTTCTCCATCCTCTTCCCTCTATTCATCATCAGCGCTAATGAGGCCAAGACACCAACAAAGCTGTACCACTTCCAGCTACGCCTCTTCTCCCTGGTTGTGCTGATCAGCAACAAGCTGTTCCACAAGACGGTCCACCTGCAGTCCTCCCTGACGTCGTCCGCCTCCTCAGAGAGGCTGTCGTCCCCCCACACCTCCCCGACCCGCCAGAGACCGCTCCCCACCCACTGATGGATCCACATGGAAAGGAGATAGGGGAGCAAGTTGATGAGTGGCTTCGCTCAGTGTCAAACAGTGATGCTTCTCAGATGGATTTCCTTTTTATTGAAGATGATACGTGGTGTAGGACAAAGGGtttacatgtttgtttgttttttaatctgaACCCTGTCCCTTTTTGGTTATTCATATGCCCACCAGACACATTTTATAGTGTGACACAAAAATCGACTGCCCTTGTGCCTCACACTCGAAACACATTATATACTCAGCTCTtgacttgattttttttcttttgtgaattTTCTttcgctcttttttttttttttttttttgtataatgtGCCATTTGAGTGACTCTCCTTTTAATAAATTACAGCACAAGAAAtcatgtagttttttttaagcaaacttGTGACGAAAGGATTTTTTTCAACTGAAAGGGCTCGTTTGCCTTCAGAAGCAAAGCACAGTCTCGTTTTGCCTAGAGTACATGTTTTCTTGATGCTGGAAGTCACGTTCCTTCCTCGCAGATTGAATGTGTTGAATGGTGTCCCAGAATAACCTTGTATAGTTAAAaggcaggcttttttttttttttttaatcctgtaAGAGCTTTGTTTTAGTAGAATATACAAATCAGTTCAGGAGCTGCTACACAAAAAAGGATTGGAAACCTTTGTAATGGTAACCAATAACAAAGTCACTGTTGTCATGTGTGTCGATGAAAAGGTTAGCTTGGTGTCTGATCCCAAATGAAGTCTCACTCCACTGTCGGAGGAGGTGTACATGTTGCGTTTTTAGTCTGTGTGAATTTAATAGGTCATAGGTGAGATGACACTGCCAAACTGTTGCATCTGTGTTTTGTTGATGTCACTTCGACCACTACAATGCTACTGTAGGCTCTGTAATAGATAAggctgggcatcgtttggatttgaaCAATTCGGATTCCAATTCGGATTCTTTATTTCTAATCCGGTTCTCATCGATTCTCAATTCTGATTCTTGTGACGGGTGGAGTTGGAACTGGTCGCATGCTTATGTGACGCTCATTTGATGATATTGATGCTTATTTTATCTGGTGATTTACCGGGCGCCGCTTACTGTGGTCCacggcaacacaacaagcgcctgtaAGTACGGTGACCGCCATGGCgcgtgttaaatttggaacctgtGATCGGATTTCCAAACCAAATTACCCAAACGGAATGGAATcggttttttttattggaatcgttttgtAATTTTTAAAACAATTCCAAGTTTGAGCCGGtactcgatgcccaatcctagtaATAATGGAGTCACATAGTTAAAGTCTTTGTATCTTAACAAAATGGGTGATCAGCCTTGACCCGCTCGCTCTAGTTTTCCCCTAGAGAGCTGAAGCGAATATAATTGGTCCCTACAGACCATGGGCTGTGTGATTTCTGTGCTGTATATAATGTCAATACATCCTGAATGTGCAACCAGAAGCCCACCACCATGCAGCTACCCGGTCACCAACCTTTCTCTCACTCGGTCATCACAGCTCATGGCCGTGGGGAGGGGGGCAGCATTCTTTTGAAACGGTGTGCAATTATTGTAAGAAGAGCATAGTGTTTGTGCAGACTGATGTATGTGAGTGAGGTTTTGTAAAAGTAATACGTCTAATTTCAATAAAATTGGTCAGTATTCAATA

Function

GO: NA

KEGG:

id description
K10134 EI24; etoposide-induced 2.4 mRNA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230416 lncRNA downstream 16652 30264550 ~ 30266434 (-) True G169912
TU230408 lncRNA downstream 167667 30046141 ~ 30115419 (-) True G169905
XR_005636545.1 lncRNA downstream 356633 29925067 ~ 29926453 (-) True LOC120544726
TU230223 lncRNA downstream 493536 29778692 ~ 29789550 (-) True G169766
XR_005636428.1 lncRNA downstream 515551 29763295 ~ 29767535 (-) False LOC120544028
TU230438 lncRNA upstream 57650 30351873 ~ 30365637 (-) True G169927
TU230439 lncRNA upstream 93631 30387854 ~ 30388055 (-) True G169928
TU230457 lncRNA upstream 134625 30428848 ~ 30429056 (-) True G169941
TU230479 lncRNA upstream 156324 30450547 ~ 30452506 (-) True G169956
TU230604 lncRNA upstream 426719 30720942 ~ 30732082 (-) False LOC120575604
XM_039777455.1 mRNA downstream 1022 30267952 ~ 30282064 (-) False stt3a
XM_039777454.1 mRNA downstream 1970 30267597 ~ 30281116 (-) True stt3a
XM_039777452.1 mRNA downstream 21892 30256061 ~ 30261194 (-) False thap12a
XM_039777453.1 mRNA downstream 22123 30256061 ~ 30260963 (-) True thap12a
XM_039777450.1 mRNA downstream 28736 30239106 ~ 30254350 (-) True si:dkey-250d21.1
XM_039777460.1 mRNA upstream 12921 30307144 ~ 30341246 (-) False LOC120543993
XM_039777459.1 mRNA upstream 12921 30307144 ~ 30341246 (-) True LOC120543993
XM_039777667.1 mRNA upstream 117006 30411229 ~ 30414735 (-) True si:ch73-1a9.3
XM_039777637.1 mRNA upstream 216501 30510724 ~ 30624394 (-) True dscama
XM_039777640.1 mRNA upstream 216501 30510724 ~ 30624393 (-) False dscama
TU230376 other downstream 334154 29945668 ~ 29948932 (-) False map6a
XR_005636389.1 other downstream 381149 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 486659 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1474656 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 1619035 28655157 ~ 28664051 (-) False ube2g1a
TU230433 other upstream 12626 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 117028 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 443832 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 534844 30829067 ~ 30829943 (-) False LOC120543890
TU230602 other upstream 555096 30849319 ~ 30851013 (-) False LOC120543892

Expression Profile