RNA id: TU230433


Basic Information

Item Value
RNA id TU230433
length 2318
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC120543993
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30306849 ~ 30341246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctattgGGTGCCTTTAGCTAAATTGacatatagtgtatatatagggATTTATAGAAATTAAAATTACTCACAAGAAtgatctctgtctctgttttaaaCTACCAGATGCGTTCCACCAAAAAGGTGTCAGTGTGGCCCGTGGCCTTTGTGGGTGGCCTACGATATGAGTCGCCCAAAGTAAACACCTTGGGCAAGGTGTATGGATGGAAGACTGTATTCGACCCCCACCGGCCCTTTGCCATCGACATGGCTGGGTTTGCAGTGAACCTGCGCCTCATTCTGTCTAAACCTCAGGCTTATTTCAAGTTACGTGGGGTGAAGGGAGGTTATCAGGAAAGCAGCTTATTAAAGGAGCTGGTCACTCTCAGCGATTTGGAGCCTAAAGCTGCTAACTGCACTAAGGTATTAGTATggcacacacggacagagaaGCCTGTGCTAGTAAATGAGGGCAAGAAGGGATTTACAGACTCTAATGTGGAGATATGACATACTTCATCTGACACAGGGGCATTTCTCCATTTGGATTCTACCTGGATTCAAACCAACCTCAGAGCTCCTTAATTAGCAACAGCCAGGGTCAGAAATATTATCACAGCACAGTAGGGTGCACTTCACCACCGCTTTGAAATGGAGGCACACCTGTCCACCCCAGGAGGCAGCACAAGCCATGTGCTTGAACGGACTACAGAGTATCAAAGCACAACTGCACAAAAGCCAGCCGCCCCGTTCTGCTCAGAGCACTGGCTAATGCGAGACACTGGTGAGAGTTGCCAAAAGGAGCTTGCCCACTGAGGTCTCCTCGGAGGGCTGAGACAAAGGATGATACGCGATTTAAACTGCAGGAAGAGATGGCACTGCACGCAATAAAGAGCCCTCTGAGCGCAGACAACACCAGCCAGCCAACCATCCAATCAGCATTAAATAGGGCCCTTTTGTTCTGAAAGTGCTGTCCGGCACAGGGCTGCACAGAGGAATAAAAGGGGCCCTTGTCTTACGTGAGTCAGCACTGACTGACAGACTGCACTGAGGGGATCTGAGCCCTCCCCACTTGTACTGTACAACACTGAGCTATTTAGATAGCCCCCCGGACCCAGCATTAATTTGGAGGTCTTGTAACTCCTTTACACACATTCTCAGCTGTCACACTGCACATGGTGAGCACAcggacacacatgcactcaaaaaaaaaacacggagcaatgatttattacattttaacagCAATGTCCTCTCTTACAGTCATTTACTCCAAGCTCGTTTATTCCTGTTATGCTGTAACACTACTGAGGTCTACTCACATTTAAGAGAAGATTCAGTATCCCTAGGGCCCTGTCTACTTCACAGACATCTTTGTAAGCTAATTAAGATCCCACTGAGTGAACGGAAGGTTTCTACGCAGAGTTATTTATTGTTTCAGAGTAGCTGGTGGTACCGTTCACTTGTTAGTCGTGAGCTATGCATGTGCGAGTAAATGGGATATGAAGCCAATTCTCAAAAAATTGGATGTGCATCCTTTCATATGTGCTGTATGCTGTATTACACAACCTAATTATTTCCACCATGGATGGCTGGCTTGCAAGTGATGATTTCATACCCCATTGACTTGCAGTGGCACTGCTTACAAATGCTAATGTTCCCAGAGTCTGTTGCTGTTAGGAATTTTCTCAGTTATCGACGTGTCAGGCATCTGAAACCTTGCACTTTCACTCAAAGATAATGGTCTGAATTTGCTACAATGCTGCTTGTGTTTCATGTGAAACACTCCTGCCTAAGATCAGATTGTCCCATAAGCCTGGTTTTTGTTTTACGTGTCCATTTCAATAACTGCATTATGCAGAATATTCACACAAGCAATACAAATCTAACAACAATATCAACTATAACTGCCATCCCCAAGCAGGATCTCAAGAGAAAATCTATGGGGAAGAGAATATACTTGGTAATTGCGCTCTATGTGTAAAGAGTCACTGTAACTAaaggtactgtatgtatatagcTATAAACTGCTCCCATACAAACATGCCTGTCTTTGTTTTTCATAttggtctgtgtgtatgtatgaagATTTTAAGGTATTATATCATACAATGACCATGATATTAACAATATTGCTATCCCTGAATTTGAAGTTTTGACCTGATGTTACAAGCGCTTTGTAAATCTATGTCAGTAGAGGTGATGACAGTCACTGGATGTCTGCTGCCATGCCAAGATCATGAGTGTCCTCAAATTGGACCTTGTAGTCACCCTCCTGCTCTTCAAACACAATGACCTTATTCATTTAAACAGAAGAAAGTGAGAGACAAATAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230425 lncRNA downstream 22447 30283123 ~ 30284402 (-) False ei24
TU230427 lncRNA downstream 22683 30283080 ~ 30284166 (-) False ei24
TU230426 lncRNA downstream 22683 30283123 ~ 30284166 (-) False ei24
TU230416 lncRNA downstream 40415 30264550 ~ 30266434 (-) True G169912
TU230408 lncRNA downstream 191430 30046141 ~ 30115419 (-) True G169905
TU230438 lncRNA upstream 41286 30351873 ~ 30365637 (-) True G169927
TU230439 lncRNA upstream 77267 30387854 ~ 30388055 (-) True G169928
TU230457 lncRNA upstream 118261 30428848 ~ 30429056 (-) True G169941
TU230479 lncRNA upstream 139960 30450547 ~ 30452506 (-) True G169956
TU230604 lncRNA upstream 410355 30720942 ~ 30732082 (-) False LOC120575604
XM_039777457.1 mRNA downstream 12319 30283086 ~ 30294530 (-) False ei24
XM_039777458.1 mRNA downstream 12626 30283086 ~ 30294223 (-) True ei24
XM_039777455.1 mRNA downstream 24785 30267952 ~ 30282064 (-) False stt3a
XM_039777454.1 mRNA downstream 25733 30267597 ~ 30281116 (-) True stt3a
XM_039777452.1 mRNA downstream 45655 30256061 ~ 30261194 (-) False thap12a
XM_039777667.1 mRNA upstream 100642 30411229 ~ 30414735 (-) True si:ch73-1a9.3
XM_039777637.1 mRNA upstream 200137 30510724 ~ 30624394 (-) True dscama
XM_039777640.1 mRNA upstream 200137 30510724 ~ 30624393 (-) False dscama
XM_039777639.1 mRNA upstream 200137 30510724 ~ 30624393 (-) False dscama
XM_039777638.1 mRNA upstream 200137 30510724 ~ 30624393 (-) False dscama
TU230376 other downstream 357917 29945668 ~ 29948932 (-) False map6a
XR_005636389.1 other downstream 404912 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 510422 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1498419 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 1642798 28655157 ~ 28664051 (-) False ube2g1a
TU230450 other upstream 100664 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 427468 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 518480 30829067 ~ 30829943 (-) False LOC120543890
TU230602 other upstream 538732 30849319 ~ 30851013 (-) False LOC120543892
TU230664 other upstream 646914 30957501 ~ 30958498 (-) True G170098

Expression Profile