RNA id: TU230438


Basic Information

Item Value
RNA id TU230438
length 942
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G169927
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30351873 ~ 30365637 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGAGACAGGAAATAGAGCCCTGCACgggcttaaaggagaattccggacGATTTTTACCTGAATCTTGATTGCTAGATTTCTCGAAGGCGGCGACGGGGGAGAAAGCAGAAGCGAGGTTGCAGGTCGGGCCCGCTAGcccggctaaggaaactaccacacagacCTCCACTGCCaagcctcctactcaccaaTGCCAGATCCATCCCACACAAAATGGCGGAGCTGGAACTCAGCATAGCAAGGAACAActacacacggaactgctgcTTGATGATTATCACCGAAACCTGGCTGAACCCCCTCATCCCGGACGCCGCTGTGCAGCTACCAGgctgagctagctaccggcaggatcgagacaagGTTCGGATCCGGAGGATGCAAACAGCTACAGGCCAATCTCCAACCTTCCATTCCTAAGTAAAATCCTGGAAAAAGCAGTTGCCGCCCAAGTCCATCAGCATATGTTCAACCATGAGCTCTGTGAACCCCTTCAGTCAGGATTCAGACCATATCATACAGAGACCGCCTTCATCAAAATCACAAATGATCTGCTCACCACTGCTGACTCTGGACACATCAGCATACTCCTTTCTCCtcgaaggcttgtatcatgtggacgcgccgacagtgttgttgtcattacttagaattcctcatgtgggcgacagaaactacgcaatATAGCTTTAAAACAATGTCAAATGAGTAGGCTAATGTGTTAAGTGGCTGTACGTTTTCTTAATCAGAAACAGAAGATTTATTGTGATTGTGCAAAATGAACAATGGAATTTTTAGCAGCAGTTCACCCAGTAttataaatctaaatctaaaagacaagaaataaatacattggaaagaaatatacaaaatgtatatacacacagaatttgaaagaaatatatacacaacaatagaaagaaatatacacactaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230425 lncRNA downstream 67471 30283123 ~ 30284402 (-) False ei24
TU230427 lncRNA downstream 67707 30283080 ~ 30284166 (-) False ei24
TU230426 lncRNA downstream 67707 30283123 ~ 30284166 (-) False ei24
TU230416 lncRNA downstream 85439 30264550 ~ 30266434 (-) True G169912
TU230408 lncRNA downstream 236454 30046141 ~ 30115419 (-) True G169905
TU230439 lncRNA upstream 22217 30387854 ~ 30388055 (-) True G169928
TU230457 lncRNA upstream 63211 30428848 ~ 30429056 (-) True G169941
TU230479 lncRNA upstream 84910 30450547 ~ 30452506 (-) True G169956
TU230604 lncRNA upstream 355305 30720942 ~ 30732082 (-) False LOC120575604
TU230607 lncRNA upstream 363365 30729002 ~ 30731888 (-) True G170054
XM_039777460.1 mRNA downstream 10627 30307144 ~ 30341246 (-) False LOC120543993
XM_039777459.1 mRNA downstream 10627 30307144 ~ 30341246 (-) True LOC120543993
XM_039777457.1 mRNA downstream 57343 30283086 ~ 30294530 (-) False ei24
XM_039777458.1 mRNA downstream 57650 30283086 ~ 30294223 (-) True ei24
XM_039777455.1 mRNA downstream 69809 30267952 ~ 30282064 (-) False stt3a
XM_039777667.1 mRNA upstream 45592 30411229 ~ 30414735 (-) True si:ch73-1a9.3
XM_039777637.1 mRNA upstream 145087 30510724 ~ 30624394 (-) True dscama
XM_039777640.1 mRNA upstream 145087 30510724 ~ 30624393 (-) False dscama
XM_039777639.1 mRNA upstream 145087 30510724 ~ 30624393 (-) False dscama
XM_039777638.1 mRNA upstream 145087 30510724 ~ 30624393 (-) False dscama
TU230433 other downstream 41286 30306849 ~ 30310587 (-) False LOC120543993
TU230376 other downstream 402941 29945668 ~ 29948932 (-) False map6a
XR_005636389.1 other downstream 449936 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 555446 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1543443 28804385 ~ 28808430 (-) False atp5l
TU230450 other upstream 45614 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 372418 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 463430 30829067 ~ 30829943 (-) False LOC120543890
TU230602 other upstream 483682 30849319 ~ 30851013 (-) False LOC120543892
TU230664 other upstream 591864 30957501 ~ 30958498 (-) True G170098

Expression Profile