RNA id: TU230450


Basic Information

Item Value
RNA id TU230450
length 1340
RNA type TUCP
GC content 0.41
exon number 6
gene id si:ch73-1a9.3
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30411229 ~ 30414735 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACGTCTCGCTGCGCTGTATTAGACTGGACTGGTACAGCTTTATCcagaatatactgtatttcctcTTGTATCGAGTAACgtttagctctgttttgttttacacAAACCAACCATGCCTAAAAGGAGCAAAtcaGGAGAAGAATCAGCGcccaAGAGGAGATCTGTAAGGTTAAGCGATAGACCTGCAACTGCAAAGGCAGAGGCCAAACCTAAGCCAAAGAAGGCACCTGCTAAGCCTAAGAAAGCAAAGGAGGTGGAGAAGGCCAAGCCTGAGGAGAAAGCACCAGAGGCCCCCGCTGAGAATGGCGAAGCCAAAGCCGAGGAAGAGGCACCGGCTACAGACGCAGCTGAAGAAAAAGATGAGGCAGCAGAATAACGTCGCTCAAACCACATCTTTTACCAGTGCTCCCTGTACCTCTTTTCTTGTACAATTCAGGGGAATATTTTTATCAACTATTTTCTAAATACAGGTTTTTTAGTAGTTTGATTGTAgagaacacttttttttaaatgaaaaaaacaacaaaaaaagtcattttggAGTCGGGAATTTCGTCACATCCCACAATTTTGCATCGCCATAAAAGTTGCGGTCATTGTTGTTACTGTCAGTGGATTTCATTTCAGTTTTAAATGTGAAGGAGGGGGGAGGGTGCAGGACAGGTTACCGTGTCAACGCGCAAGCACAACGTTCACAGGAGCTGGGACAACAACCGGAAGAGCGTGTCCGCGGGGACTACATTCCATATGCTTTATAAGGGACAGTGTATGTAATCTGTGCCGGGGTGGGGATGGACAAAGTCACAGGGCAActcattgttttattgtttataatGAAGAACAGTGTTTTAGAATGTTTGTAAGCTTTGTTCCTATATGTTAACTCTTGTACTCATGCCATTTTTCTTAATGAATCTGATCAATAAAGCTAAAATCCCTATTACTGGAGCTCTCCCTATTAGAGCTGTGCATCGCTAGTTTGGTTGTGTCTCTGTTCTGTGATAGCATCGCAATAACTTTGTAAAGCTGCTGTGAAAAGGGTTTTCAATCTTTCTATATGCAGTGGGTAGTGGTACATTGTAAGGATGGTAAAAATGGAATTTGTTTTCGTAGCCAAGCTAATGAGGTGTgtaaccattaaaaaaaaaaaaaaaacctgttgaGACTGGCTTCTTAAAGGCCAACAAACAAAACTGTACATTTATTTGAGATGTCAAATGCATACCAGCAGTAGCAATATTCATGTGGGTTTTAGATCTCTGTATCAAGTACAAGTGTGCAGTTCCTTATTTGTTTATAGATGTACCTGTGTAATGATTGTTATCAACGAACCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230439 lncRNA downstream 23196 30387854 ~ 30388055 (-) True G169928
TU230438 lncRNA downstream 45614 30351873 ~ 30365637 (-) True G169927
TU230425 lncRNA downstream 126849 30283123 ~ 30284402 (-) False ei24
TU230427 lncRNA downstream 127085 30283080 ~ 30284166 (-) False ei24
TU230426 lncRNA downstream 127085 30283123 ~ 30284166 (-) False ei24
TU230457 lncRNA upstream 14155 30428848 ~ 30429056 (-) True G169941
TU230479 lncRNA upstream 35854 30450547 ~ 30452506 (-) True G169956
TU230604 lncRNA upstream 306249 30720942 ~ 30732082 (-) False LOC120575604
TU230607 lncRNA upstream 314309 30729002 ~ 30731888 (-) True G170054
XR_005636409.1 lncRNA upstream 373776 30788469 ~ 30791876 (-) True LOC120543896
XM_039777460.1 mRNA downstream 70005 30307144 ~ 30341246 (-) False LOC120543993
XM_039777459.1 mRNA downstream 70005 30307144 ~ 30341246 (-) True LOC120543993
XM_039777457.1 mRNA downstream 116721 30283086 ~ 30294530 (-) False ei24
XM_039777458.1 mRNA downstream 117028 30283086 ~ 30294223 (-) True ei24
XM_039777455.1 mRNA downstream 129187 30267952 ~ 30282064 (-) False stt3a
XM_039777637.1 mRNA upstream 96031 30510724 ~ 30624394 (-) True dscama
XM_039777640.1 mRNA upstream 96031 30510724 ~ 30624393 (-) False dscama
XM_039777639.1 mRNA upstream 96031 30510724 ~ 30624393 (-) False dscama
XM_039777638.1 mRNA upstream 96031 30510724 ~ 30624393 (-) False dscama
XM_039777641.1 mRNA upstream 96031 30510724 ~ 30580057 (-) False dscama
TU230433 other downstream 100664 30306849 ~ 30310587 (-) False LOC120543993
TU230376 other downstream 462319 29945668 ~ 29948932 (-) False map6a
XR_005636389.1 other downstream 509314 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 614824 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1602821 28804385 ~ 28808430 (-) False atp5l
TU230595 other upstream 323362 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 414374 30829067 ~ 30829943 (-) False LOC120543890
TU230602 other upstream 434626 30849319 ~ 30851013 (-) False LOC120543892
TU230664 other upstream 542808 30957501 ~ 30958498 (-) True G170098
TU231114 other upstream 1787016 32201709 ~ 32202206 (-) True G170463

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004454 True 1739 lncRNA 0.40 6 NC_007121.7 39084012 ~ 39087853 (+)
grasscarp (Ctenopharyngodon idella) TU442017 False 164 TUCP 0.41 2 CI01000197 214430 ~ 216633 (+)
rainbow trout (Oncorhynchus mykiss) TU254011 False 2368 lncRNA 0.39 3 NC_048567.1 9118840 ~ 9121329 (-)
eurasian perch (Perca fluviatilis) TU14856 True 308 lncRNA 0.50 1 NC_053112.1 38768540 ~ 38768847 (+)
bowfin (Amia calva) TU14856 True 2135 TUCP 0.41 6 CM030122.1 12323161 ~ 12329033 (-)
tiger barb (Puntius tetrazona) TU254011 False 839 TUCP 0.44 6 NW_025047682.1 1159956 ~ 1163063 (+)
mexican tetra (Astyanax mexicanus) TU236173 False 1440 TUCP 0.40 7 NC_035916.1 8548953 ~ 8552609 (+)