RNA id: XR_005636389.1


Basic Information

Item Value
RNA id XR_005636389.1
length 3369
RNA type transcript
GC content 0.52
exon number 14
gene id LOC120543707
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 29882806 ~ 29901937 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGCCACATGAACGTTTAGAACGACAACTTTGTACAGTCAGACTGAGCCGCAAAGCAAGTCAAGTAGCCGCAAGAACTGCACTCTCTTCGCTTTCAGGATGTTTTCCCGGGTCTCTTGTTCAATATCTGGATATCGTCCGGTGGCCCTTAACCGCAGACTTTGGAAATAATTCCTATTTGGGAAACTTTGGCGGCTCCATAGCTAATGAAGAATAGTTAGTTAAGCGAACCGAGACGAAGATTAGCTAACTAAGCTAACAACCATATTCAGTGACAGGAAGAGAGTGCGCTTTTCTGCAGGTTTATTTGAACCCAGAGACTACTTTCAGCTCTTTAACAATGCTCTAGGTCTCTATAACCAGCTTGCGTAGTTTGGGACATCTATATGGCTTTAAAAAGCTACTATGGAGTACTGCAGAGCGGATCCCAATAAGCATAATTTGTTTTGGGGGTTGAGATCAGTGCTGTTATCAGTTATGGGAGATTGCTTTCGCCGTTCCCTGACTAAACACATACTATGAGGTTGCCAGGGTATTTCTCAGAGGAGGTGTGTTAAGCTGTGATCGTCGTTTTCATTTGCGAAGGATGTCCGACTTTGAGAGTTCCAGTTCATATTTTGGTCTGGAGGATCCGCAGTGGCTATGCATGGTCACACTTTTCTTCGCATCCCTGGTTACTCTAATACTGTATTTCGTACAGTATTTCCAAAAGGGGCGTGTATTAAGTAGGCAGACAGCAGCAGAGGACAATGCGGCGAAGGAGGAAGCCGCGGCTCTGCTGGGATGGGCGCTGTCACTAAAAAGCTGGAAAAGCCAGTGGAGAGGAGCTTGGTGCAGGGCTTTGAATGACCAATCAAGGAAGCGTGGGAGTCCTGTTCTGTTGACATTTGAAGAGGACGATCTTGAGGCATCTGAGCTCATGGTCAGCCAGGTGTCCAGCTTTCAGAAGTCTGCCAGAAACAAGGCCGCTTGCTGCAGTGTTGTTGGGGAGAAGCTTCAGTTCTCTCTCAGTGCATCATCGGCAGCCATGGCTACAGCAGATCCTTGTAAATACACAGTCTGTATAGCTCCACTGGAGCTGCAGCTCGACCTACAGATGCAGGAAGCTGAAGATGAGGTCAAGGTGAGCTGGGGAGTGTCTCACCTGGACACGGTGGAGCTGCAGGTGATGCCCACCTTCACCCAGgACAATGCCAACACTTCCAGTGTAGCAGCCATAAAGGAGGAGTTGAGGCGGCTGTTGTGTGCGACGCGTCCCTCTGTGTTGCTGAGCTGCAGGCCCGCTCAGGCCTCAGAGGTCAAGGAAGCACGGAACAACATGGCTTCACCCCCGAAACCCCCCCGCGCCCACGACTGGAAGCTGCTGGTGAAGAACATCCGGGTGACACTGAATCAGGAGGAGGATGCTGCAGGCAGCATGAATCCTCTATGTGTAATGCAGTTGGACGATCCTCCACAGAAGTTTAACACCTCGGTTTTAAAGAACACAACCAATCCTGGTTGGGACCAGCCGTTTATCTTTGAATTGAATGGACGATCAAAAGAGCTCAATATTCAGTTAATGAATGACGGCCAACCTCAAGAGAgttCATTACTTGGTCGGGTGTCAGTTCCTTTTGATCTTGTAAAGAAGCAGCCCAAAGGACAGCAAACATTTGCACTCATGACCAAAGACGTAGTGACTGGATCACTTACTACTGATTTTACCTACCTGGAGCCCAGTGAGGTGAGGTCCTGGCACCCCCCGACCCCAGCCTCCAATAAGAGGGTGGAGATGGACCGTACAGTCATGCCCTGTGGCACGGTGGTCACCACCATCACCGCAGTGAAGAGCAAGCCGGGTCGACCACCCTCTCTTGGACTCAACATAGATCCTGCCCAGAAAGCGGTGGCCAACAAGCCCAAGCTGTCAGAGCGCCGTGTGTCAGAGCAGGCGTCTATGCTGGGGGCCACGGTCAGCAAGGCCTTGTCCTCTTCTGATACTGAGCTGCTGATGCTCAATGGCACGGACCCTGTGGCCGAGGCCGCCATCAGACAACTCCACCAGTCTGCCAAGCAGAAGCTCAAGTCCCCAGTGAAGAAGAGTACCATCATCATCTCCGGCATTGCCAAAACGCCGTTGTCTCAGGATGATGAGCTAGCTCTGATGGCGGGCTACGCTGCAGCGATGGACGCCTCGATGTCTGAGAGCAGCTCCACTCAGGATGTGACCGGGGCACTTGCAACAGGGACCAGTAGCCCTCCAGACATGTCCGAGCCCCAGGAAGGCCCCAGTGGAATCGGACGGCCTCCAGAGGACTGGGAGAGCCAAACCGGAGAGGAACTAGACCATTCCTCGCtatccatgtgtgtgtctgaggcAAGCTGCAAGAAGAGAAGAGGCAGCTTCCTCCAGAAGGGTGCCAAGCTCTTCTTCCGGCGGCGGCACCAGCGCAAGGACCCGGGGATGAGCCAGTCGCACAATGACCTGGTTTACCTGGAGTCTCCGGCCGCCGTGGAGCGGGCCAGTCGAACGGCCACGCTTAGCCGCATGCTCACCCGCAAGAGTAAGAATAAGAGCAAAGCTAACGGCTCTACCTCCATGGGGGAGCCACATGCGTGACCCCCCATCCCCCCGCCCTCTCCCTTCTCACCTTAGTCCCTCCTACAACAACTACCATCACCACCTCAAAACTTGCACTGGCAAACTTCCTGGCTAACTTACTCCCCTGAATGCCCGACCTGCATCTTTAGGGAGTCCTGCATTGTAGATGGGGAAGCTGTGCAGATGGGGGGGGAAATCATCTTTTACTGCCGTTTCCTGCTTCCTGTAAGAAGCAGATATTCCACCAACAGCAAGTTgcacagtgtgtgcatgtgtgaatgaAGACCGAAGGGACTGGTGTGCCTCACTGACTCTGATACCTCTTTCACACCAATGACCCCGGGGCAGACCAGGGTTTTCTGACCTGTGTTCAGCCCTTCTTTTGTCaattcaaaccaagccagtcaACAGGGGTTGGTCCTTGTTCATGATATTTCAGATACGACCTGGGTCACGACCCAGACGATGCACACCATATAGTCCAGGTGCTGGAAATGGGCGGGGCGGTTTACACTcgaatagtgcgttccatttgtactcggaagtcgGATTTTCCGTGGTCAACGTCAGAAACCCCCTGACCTCGGTtttccgagctcggaactcggaCAACCACAGAGTACCCCGAGCTAAAAATCCAATGAGGCCGCTCCGTGCATCAACAGCTGTGAAAGCTGTATGAACGtacagttataagcacttctgtcttatttgtgtctcactaaatcagtcgtacacacactgtcctgtccatcttctatctgtTGTTAAGCTgcttgtatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230223 lncRNA downstream 93256 29778692 ~ 29789550 (-) True G169766
XR_005636429.1 lncRNA downstream 115230 29763096 ~ 29767576 (-) False LOC120544028
XR_005636430.1 lncRNA downstream 115262 29763096 ~ 29767544 (-) False LOC120544028
XR_005636431.1 lncRNA downstream 115266 29763295 ~ 29767540 (-) False LOC120544028
XR_005636428.1 lncRNA downstream 115271 29763295 ~ 29767535 (-) False LOC120544028
XR_005636545.1 lncRNA upstream 23130 29925067 ~ 29926453 (-) True LOC120544726
TU230408 lncRNA upstream 144204 30046141 ~ 30115419 (-) True G169905
TU230416 lncRNA upstream 362613 30264550 ~ 30266434 (-) True G169912
TU230427 lncRNA upstream 381143 30283080 ~ 30284166 (-) False ei24
TU230425 lncRNA upstream 381186 30283123 ~ 30284402 (-) False ei24
XM_039777475.1 mRNA downstream 3522 29849785 ~ 29879284 (-) False prdm15
XM_039777472.1 mRNA downstream 3522 29850263 ~ 29879284 (-) False prdm15
XM_039777476.1 mRNA downstream 3522 29851889 ~ 29879284 (-) False prdm15
XM_039777474.1 mRNA downstream 3643 29850263 ~ 29879163 (-) True prdm15
XM_039777480.1 mRNA downstream 32581 29833590 ~ 29850225 (-) True ripk4
XM_039776864.1 mRNA upstream 2591 29904528 ~ 29912667 (-) False zbtb21
XM_039776865.1 mRNA upstream 2591 29904528 ~ 29910580 (-) True zbtb21
XM_039778678.1 mRNA upstream 18950 29920887 ~ 29923512 (-) True LOC120544725
XM_039777965.1 mRNA upstream 44122 29946059 ~ 29971080 (-) False map6a
XM_039777967.1 mRNA upstream 44122 29946059 ~ 29971079 (-) False map6a
TU230221 other downstream 86379 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1074376 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 1218755 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 1535316 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 1659556 28217243 ~ 28223250 (-) True srrm3
TU230376 other upstream 43731 29945668 ~ 29948932 (-) False map6a
TU230433 other upstream 404912 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 509314 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 836118 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 927130 30829067 ~ 30829943 (-) False LOC120543890

Expression Profile