RNA id: TCONS_00008405


Basic Information

Item Value
RNA id TCONS_00008405
length 493
lncRNA type intronic
GC content 0.23
exon number 1
gene id XLOC_003518
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28662904 ~ 28663396 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttagattaagttaaatgaaaataaatattttcaagtttttaaatgttaattccatataatgtttattttatattacgaCAATGATCATTCATTTTATGAGTTTAGTAATTGAAACTAAAATAACCCTGATTGATCTTGATTATCCAAAATATTAGTATTTGTGCATCCCTTAGAAATTCAGTACATTGAACAATGGCATCttaacacattaaaaacatttataaattgtaCAAACCCattaaaaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaattaatcaatcaatcaaatcaatcaatcaaatcaaatcaaatcaatcaatcaatcaatacctttccttttgaaaaaaaaaacagaacagaaaacagaaaaaataaacattgtaccaACTCATCAAGTCATGTTTATAAATCATTGCAACGAAATAAGAAGATGTTTAAGCATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008630 lncRNA upstream 19204 28637462 ~ 28643700 (+) True XLOC_003517
TCONS_00008629 lncRNA upstream 45945 28547034 ~ 28616959 (+) True XLOC_003514
TCONS_00008628 lncRNA upstream 68428 28533224 ~ 28594476 (+) False XLOC_003514
TCONS_00008627 lncRNA upstream 74270 28533224 ~ 28588634 (+) False XLOC_003514
TCONS_00008626 lncRNA upstream 125589 28533224 ~ 28537315 (+) False XLOC_003514
TCONS_00008631 lncRNA downstream 133871 28797267 ~ 28836699 (+) True XLOC_003519
TCONS_00008406 lncRNA downstream 544490 29207886 ~ 29208193 (+) True XLOC_003520
TCONS_00006892 lncRNA downstream 903350 29566746 ~ 29567634 (+) False XLOC_003523
TCONS_00008407 lncRNA downstream 927477 29590873 ~ 29591196 (+) True XLOC_003524
TCONS_00008632 lncRNA downstream 1241852 29905248 ~ 29906829 (+) True XLOC_003530
TCONS_00006889 mRNA upstream 31562 28620683 ~ 28631342 (+) True XLOC_003516
TCONS_00006888 mRNA upstream 43093 28617564 ~ 28619811 (+) True XLOC_003515
TCONS_00006879 mRNA upstream 147926 28476298 ~ 28514978 (+) True XLOC_003512
TCONS_00006876 mRNA upstream 238718 28218141 ~ 28424186 (+) False XLOC_003510
TCONS_00006875 mRNA upstream 241810 28166165 ~ 28421094 (+) False XLOC_003510
TCONS_00006891 mRNA downstream 874360 29537756 ~ 29540033 (+) True XLOC_003522
TCONS_00006894 mRNA downstream 1008265 29671661 ~ 29677714 (+) False XLOC_003525
TCONS_00006895 mRNA downstream 1008273 29671669 ~ 29677693 (+) True XLOC_003525
TCONS_00006896 mRNA downstream 1075952 29739348 ~ 29755142 (+) True XLOC_003526
TCONS_00006897 mRNA downstream 1107570 29770966 ~ 29786528 (+) False XLOC_003527
TCONS_00006865 other upstream 1142331 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 2048317 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 2584843 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 3179934 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 3184486 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006890 other downstream 688705 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 903351 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 2308638 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 2311375 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 2352123 31015519 ~ 31024572 (+) True XLOC_003549

Expression Profile

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