RNA id: XM_039777452.1


Basic Information

Item Value
RNA id XM_039777452.1
length 2706
RNA type mRNA
GC content 0.48
exon number 5
gene id thap12a
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30256061 ~ 30261194 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGGAAATTAACTTGCTGCTCAACGAAGGTGCTTGACAGCTAACTAGCAACATAATTGGCTACCCCTAAAGGATTTCACaccgcaaaaaaaaagaagtatacAAACTAATAATGCAGAATCACTGCGTTGTGCCGAACTGTACAAGTGGCAAATCCGACCCTCTCTTCAGGTTTCCATATGATCCAGAAAGGTCCAAGAAGTGGGTTGAAAAATGCCAGAGGCAAGATCTCATAGACAAATCACCAGGCCAGTTGTGCAGATACTACAGACTTTGTgggaaacattttgaaaaatcttCATTTTATAGTGTGTCTCAGAGTACAGTGCTAAAGGACGATGCCATACCAACTATCTTTGATGTACCAAGCCAACCTCAAAATGGGCAGGTGAAGCGCAGTAGACAGCCGGTCAGACCAGAAGAAACGGACAAAGAGGGGGGGAAAAAAATCAAACCGTCTCCAGCAGAGACAGCTGAGAAAGATGCCAAGACTGTCCCAGAGGAAGAGGAATACAAAGAGTATCTTAAGTCATTATTTGAAGTTCTCGTACTGTTGGGAGAGAAGAGCATTCCTCCGACAGGGCCTGGTGATAGTAAGCAGGATGGCCTCGGGTCAAGCAACTTTCAGACATTGTTAGAATATCGCATGCATTGTGGAGATGAAGTCCTTAAGAAGAGGTACGACGCGAATAAGGAGTGCTGCTCCTCAGCTCAGCTGAATCAGCTGATTGAGGTGTGCGAGAAATCCATCCGCAGTAAGCTGATGGAGGAAGTTCAACAAAATGGCCACTTCTCATTACTTACTGGTGACTTGGTGAGGATCTCAGGAGAATGGTACCTCCCCGTCTTTCTCCGTTACGTGGACCAGTGGAACTGCCAGCGGGAGAGGTTCATCGGATGCTTGTCCTTTGAAGGCAATGGAGACGCCTTAGCGGAGAAACTTCTGTCTGACTTGACTGACAAATGGGGCTTGGATATGGAACAGTGCAGAGGTCAAGCCCACTCCTTCTCTGGGACACATTTTAGTCAAATGAGAAGATTTGCTGCCAAACTGAAGGAGAGGTATCCAACGGCAGTGCTTGCACTAAGATCTACTCGTCCATTGAACCTGTCACTGGCAAATGGCATGGCTTTGTCAGGGGTCCAGCTTGTAATGTCTACCTTAAGGAGGATTGAGTCATTCTTCAGCCAGTCCCCTCTGCTGCAGTTGGAGTTGGAGCACGCCATTTTGATTTTCTACCCGGACAAAGAAGAGAAGGCCAAGGAACTGAAGGAGATCTGTAGAACAAACTGGACCAGAGGAAACGATGCATTCGAGGTGGCGGGGGATCTCCTGGAGGCATTGCTACTCTGCGTAGACAGCGTTCACGACAATGAGGACATGAGGTGGGACGATCAAGTCACGCACAACGCCTTGGAGATTTCAAAAGCCCTCGCTGATTTTGAGTTCGTCATGGCGCTGGTCGTGCTGAAAAACGTGTTTACGCTCACGCAGGCGTTTGGGAAGAACGTGCGAGGGAGCGCGGCAGACGCCCACTTTGCTGCAGCCAGTTTAAAAGCTGTCTTGCACTCCCTGAAGGAAGTGTCGGACAACATCGACGTGTACCACGAGTTCTGGAACGACGAGGCCGTCAACCTAGCTGCTGCGATGGAGATCCCGGTTACGGTCCCGCGCTCCTTCTTGAGAAAGCACCAGTCGGACTCTGGAGCCGTTCGGCCGGAGACTCACTACAAGGAGCACCTGTCTGTTCCCGTGGTGGAGCATGTCACCAGAGAAATGAATGAACTCTTCTGCGAGGACCACATGAAGGCTCTGAGATGCCTCTCCCTGGTCCCTGCTGTCATAGAGCAGTACAAGTCTACCGAACCCGACGAAGAGAACGTGCAAGTGTTCAAAAATGACATCCCTAACGCAGGGACCCTCTCCGCCGAGCTGCACTGTTGGTGGGTCAAATGGAGCAAAAAGGGCAAAGGCGAGACTTTGCCGTCCAGTCTCCACGACACGCTGCAGCTGGCCGACGTGAAGTTCTTCCCAAACATGCTTGCCGTTCTGAGACTGATCGGCATCCTGCCCACCTTGGCTCTGGAGGACAGCTGTGACGTGGCGTACAAGCGCTTCCAGATGTACATGGAGCACACACCTGACAAATTCAAATCAAAAAGTCTCGCTCTTTTGTACGTTAACAATGATGTTGGGTATGATCTGGATTCAATGGTTGAGGTCTACATGAAGACATACCCTGACAGGGAGGGGTTGTGATTATGGTAGTTAAGCCTCTGGACAGATTATCCacagcttttttttaatgagtcagtcagcttttttatttttattttttctactaTCGAGCCCGCATACTGAAGTAGCATCTTTATGCTTTTTGTGATGAAACTGACACTGGCTTGCAAAGTGTCACCATTTGAGTGATAAATACCCGACCTCTTTGAATTTAGTTTTTGTAATGTTTGTCCTTTTatgctgttttcattttatgtttTGGGCAGCCAGTATTGGCCACTCTGTTACCAATCTGTTATGAATCCTGATTGCAGCTTTTCAAGTCCATTTCTCGACTCTGTTGTTGAAATAAGTCGGAAATTGTAAGAGTGTGAGTTATTTACTCCTGTAAGcctcattaacccttgtgttgtcttcccgttcaCCATGAActtgtccttctgggtcaaaattaaaaatggaactttc

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230408 lncRNA downstream 140642 30046141 ~ 30115419 (-) True G169905
XR_005636545.1 lncRNA downstream 329608 29925067 ~ 29926453 (-) True LOC120544726
TU230223 lncRNA downstream 466511 29778692 ~ 29789550 (-) True G169766
XR_005636431.1 lncRNA downstream 488521 29763295 ~ 29767540 (-) False LOC120544028
TU230416 lncRNA upstream 3356 30264550 ~ 30266434 (-) True G169912
TU230427 lncRNA upstream 21886 30283080 ~ 30284166 (-) False ei24
TU230425 lncRNA upstream 21929 30283123 ~ 30284402 (-) False ei24
TU230426 lncRNA upstream 21929 30283123 ~ 30284166 (-) False ei24
TU230438 lncRNA upstream 90679 30351873 ~ 30365637 (-) True G169927
XM_039777451.1 mRNA downstream 1711 30239106 ~ 30254350 (-) False si:dkey-250d21.1
XM_039777450.1 mRNA downstream 1711 30239106 ~ 30254350 (-) True si:dkey-250d21.1
XM_039778453.1 mRNA downstream 27896 30214539 ~ 30228165 (-) True wnt11
XM_039777966.1 mRNA downstream 284982 29946059 ~ 29971079 (-) False map6a
XM_039777454.1 mRNA upstream 6403 30267597 ~ 30281116 (-) True stt3a
XM_039777455.1 mRNA upstream 6758 30267952 ~ 30282064 (-) False stt3a
XM_039777457.1 mRNA upstream 21892 30283086 ~ 30294530 (-) False ei24
XM_039777458.1 mRNA upstream 21892 30283086 ~ 30294223 (-) True ei24
XM_039777460.1 mRNA upstream 45950 30307144 ~ 30341246 (-) False LOC120543993
TU230376 other downstream 307129 29945668 ~ 29948932 (-) False map6a
XR_005636389.1 other downstream 354124 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 459634 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1447631 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 1592010 28655157 ~ 28664051 (-) False ube2g1a
TU230433 other upstream 45655 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 150057 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 476861 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 567873 30829067 ~ 30829943 (-) False LOC120543890
TU230602 other upstream 588125 30849319 ~ 30851013 (-) False LOC120543892

Expression Profile