RNA id: XM_039777472.1


Basic Information

Item Value
RNA id XM_039777472.1
length 3756
RNA type mRNA
GC content 0.56
exon number 24
gene id prdm15
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 29849785 ~ 29879284 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGGTCTTGCGCCGTTTCTGGAGCGGATTGGAACCCGGAGTCAGGATTCGCTAAATGAAGGGTCTTTTGCAAAAAAGGTTGGCATAATGGCTGAGCAGACGCCAGATGAGTTCATCTggtGTGAGGACTGTGGCCAGTACCATGACTCCGAGTGTCCTGAGCTGGGGCCCCTGGTGACTGTCCAGGACTCCTTCGTCCTTAGCCGGGCCCGGTCGTCTCTACCAAACAGCCTGGAGATCCGACAGGTGGCTGACGGCCACGAGGGGGTGTTTGTTCTGCGCCGGCTGGTCAAGAGGACCCGCTTTGGGCCCTTTGAGGCTAAGAGGGTCCCCCACCTGGAGAAGGAAGGAGCCTTCCCTCTTAAGATCTTCCAGAAGGATGCCGTGGTGGTGTGTTTTGACTCCAGCAGCGAAGAAGACTGCAACTGGATGATGCTGGTGCGACCTGCCACCGACCACAAACACCAGAACCTGACGGCCTACCAGCAGGACGAGGACGTGTACTTCAACACCTCCCAGGATGTGCTCCCAGGAACAGAGCTGAGAGTCTGGTACGGCGCGTTCTATGCCAAGAAGATGGAGAAGCCCATGCTTAAGCCTCCACTTCAAGCAGCACTTCCCCTAGAGGTGACAGAGACCTCGGAGAAACCTGGAGCCCACATGCCCCCAGTGGCAGAAGAAAACAATGCAGGCAACATGCCGAGTCATGGCGACGAGGTGAAGACGGCAACAGTGCTTCCGGTCGACCCACTCCTGCCCCAAGAGGAGAGCCTGGTCGGCCTGGGTGAGGAGCAGGGCGACCCCCCCGCAGCTCAACCGGGCCCCAAGAGAGGGCCGGGCCGGGGGAGGCGAGCTAAGGGACGCAGGCCCGGAGCTACAGCCACCGCCAGCAAAAACAAAGATGTGAAGCCCTCGGTGGAGAGCTCCAAGCCGGCGGCCCCAgaggcaacagcagcagcagcagcagcagcagggagcAGCAGCCTGCGGAGCACCGCTGACGGCGGGGCCGTCCCCAAGAGACACAAAGCCAGAGAGCACAAGAGGGTGTACCGCTGCTCCCTCTGCAACAAGGTCTTCCAGAACAGCAGCAACCTCAACAGACACATCCGATCGCATGGTGATAAGCTGTTCAAATGCGATGAGTGTGACAAGTTGTTCAGCCGCAAGGAGAGTCTAAAGCAGCACATCTCTTACAAGCACAGCAAGAACATGCCTGACCAGGACTACAAATATAAATGCAACACGTGTGAGAAATCCTTTCGCCTGGAAAATGCCTTAAAGTTCCACAACTGTCGGACAGACGACAAGACGTTCCAGTGCGACATCTGCTCGCGGTTTTTCTCCACCAACAGTAACCTTTCCAAGCACAAGAAGAAGCACGGCGAGAAGCTCTACTCCTGTGAAATCTGCAACAAGATGTTCTACCGCAAAGATGTGATGCAGGAGCACCACAGGAGGCACGGTGTGGGACCAAAGCACATGAAGAGAGAGGAGCTGGAGGTCAACGGAGAAGAGGGGAGCAGGTACAGGAAGGAGCCGTCCCCCTGTCCCATCTGTGGCAAGGTGTTCTCCTGCAGGAGCAACATGAACAAGCATCTGTTGACTCACGGCGATAAGAAGTACACCTGTGAAATCTGCGCTCGCAAGTTCTTCCGCGTGGACGTCCTCCGAGATCACATTCACGTTCACTTCAAGGACATCGCCTTAATGGACGAGCAGGAGAGAGAGGCCTTCATCAACAAGATTGGCATTTCAGCAGACGACAGCGACGAAACGGACGACGACGAAGAGGAAGACGATCCCGAGCACCACAAGTACAACTGCAAGAAATGCCAAcTGTCATTTGCGAAGGGCAAAGAGTACCTGAAGCACATCATGGAGCAGCACAAGGAGAGGGGCTACGGCTGCGGGATCTGTAACCGACGTTTCGCACTGAAGGCCACGTACAATGCTCACCTGGTGATCCACAGAGAGCAGCTGCCTGACCCTGCAGTGCAGAAGTACATCCATCCATGTGAAATTTGTGGCCGGATCTTCAATAGTATTGGTAACCTGGAAAGGCACAAGATCATCCACACTGGGGTGAAGAGCCACGGCTGTGATAAGTGTGGCAAATCCTTTGCAAGAAAGGACATGCTGAAGGAGCACCTGAGGGTTCACGATGACATCCGGGACTTCCTGTGTGCAGAGTGCGGGAAAGGCATGAAGACCAAGCACGCTCTGAGGCACCACATGAAGCTTCACAAGGGCATCAAAGAGTACGAGTGCAAGGAGTGTAACCGCAAGTTTGCCCAGAAGGTCAACATGCTGAAGCACTACAAGAGACATACGGGTATAAAGGACTTCATGTGTGAGCTGTGTGGAAAGACGTTCAGTGAGAGGACGACTCTAGAAACGCACAAACTCATCCACACAGTGGGTAAGACGTGGACGTGTGCGACATGCGATAAGAAGTACCTGACAGAGTACATGCTGCAGAAGCACGTCCACCTCACTCACGAGAAGGTGGAGGCCCAGTCGTGTCACCTCTGCGGGACCAAAGTGTCCACCCGCGCTTCCATGAACCGACATCTGCGACGCAAACACCCCGAGGTGGTGTCTGTCAGAATGGATGAGTTTGATGAACTTCAGGAGGCCTCGACAATCACAATCAATGATTCGTCTATCAGCATTGTGCAGCCCACTCTGATCCTGGATAAAGACGGCGTGGCTCAGGAGAGGCCCAGCCGGCTGCCCCGACACCCCAAGAAGAAGCAGAGGGTCCCAGCTGAGCCGGAGCTTTCCGAGTCAGACGAATACGTGGACTTCCCCGAGCCGAGGCACGAGCCCATGACCGAATTCAACGCTGTCATCGTCGGCGACGAGCACGAGACCAGCTCCGCTGTGCAGAGTATCCAACAGGTGGTGGTCCTGGCCGACCCCGGCACTCCGTCATCCTCCTCCCCCAGCAGCTCGGTGGGGCTGACCAACATCACGGTCACGCCCATCACCAGCCACGCCCCCGCACAGTTCACCAGCCTGCAGCCCGTGGCCGTGGGCCAGCTGACTGCCAGCGACCGGCCCCTCACCCTGGACAACTCCATCCTCACCGTGACCTTCGACGCCGTCAGCGGCTCGGCCATGCTCCACAACCGGCCGGCCGAACTCGTCCCGGAGACGGTGGGTCCCGGCGGGGGCGCGGCGCCCCAGTCGGTCGCCCACTTCATCAACGTCACCACTCTGGTCAACCCCATGGGCCACCAGCTGGAGGCCCCGACTCTGTCCTGGAGGCCCGTACCGGCGGCTGAAGGCAGCCAGGTCACCCCCGTGGTGGAGGGGGCTCAGAGGGAGAGTCAGGAGGTCCAGAGTCAGGGCCCGGAGCCGGGACATCCCATCCAGAGCCAGCCCCCCAccccgcagcagcagcagcagcaacagcaacatgGCGGCTCTGCACAGCAGATGTTCAGCTACTAGAGCAGAGACCAGAGGTGCTGGTcacctcacactcacacactgtaATATAGTAGAGTAGATTTTATCTTTATCTGTAATCGTGTAAACTTTGATCACTGTCACCCTGATGCCTCTCCAGCCCCATGGAAGTGAATGAAATTGTaaagattttttcttttctttttttatactgaCAAAACACAATGTTTGTTAATAATTAACAtcataatttaaaaagaaaaagacactcCTCTGGAAGATTTACATTTCAAACCAAAGCAACATGTTGAATATTCAAACGCCTTaccaacctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230223 lncRNA downstream 60713 29778692 ~ 29789550 (-) True G169766
XR_005636429.1 lncRNA downstream 82687 29763096 ~ 29767576 (-) False LOC120544028
XR_005636545.1 lncRNA upstream 45783 29925067 ~ 29926453 (-) True LOC120544726
TU230408 lncRNA upstream 166857 30046141 ~ 30115419 (-) True G169905
TU230416 lncRNA upstream 385266 30264550 ~ 30266434 (-) True G169912
TU230427 lncRNA upstream 403796 30283080 ~ 30284166 (-) False ei24
TU230425 lncRNA upstream 403839 30283123 ~ 30284402 (-) False ei24
XM_039777480.1 mRNA downstream 38 29833590 ~ 29850225 (-) True ripk4
XM_039777479.1 mRNA downstream 383 29833590 ~ 29849880 (-) False ripk4
XM_039777477.1 mRNA downstream 3968 29833590 ~ 29846295 (-) False ripk4
XM_039777478.1 mRNA downstream 4219 29833590 ~ 29846044 (-) False ripk4
XM_039778069.1 mRNA downstream 24021 29806845 ~ 29826242 (-) False c16h21orf91
XM_039776867.1 mRNA upstream 3522 29882806 ~ 29901937 (-) False LOC120543707
XM_039776866.1 mRNA upstream 3523 29882807 ~ 29901937 (-) True LOC120543707
XM_039776868.1 mRNA upstream 4475 29883759 ~ 29901937 (-) False LOC120543707
XM_039776864.1 mRNA upstream 25244 29904528 ~ 29912667 (-) False zbtb21
XM_039776865.1 mRNA upstream 25244 29904528 ~ 29910580 (-) True zbtb21
TU230221 other downstream 53836 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1041833 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 1186212 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 1502773 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 1627013 28217243 ~ 28223250 (-) True srrm3
XR_005636389.1 other upstream 3522 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 66384 29945668 ~ 29948932 (-) False map6a
TU230433 other upstream 427565 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 531967 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 858771 30738055 ~ 30739267 (-) False LOC120543890

Expression Profile