RNA id: TCONS_00006893


Basic Information

Item Value
RNA id TCONS_00006893
length 660
RNA type processed_transcript
GC content 0.46
exon number 4
gene id XLOC_003523
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29566746 ~ 29571528 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTTGGGGAAcagcaacattttattttgagcTGGTTTCATCACTGAGGAAGAAGATTTTTGTGTTGGGTTTGTAATGGGGGATCCTGCCATCCGACTTTTAAGgCTCTCTTTAGCGCTTCTCAGTCTCTGTCTACATGGCCAGATCAAAACTGTTTATGGCAGTGAACCTTATCCTGGGTCTTATAATGTTGGATTTCCCATGATGGATGGGCTTAGACCATGGAATCTGTATGACCAAGGAGGTTTCACTGGGCCTCTAATACCCAACAATATGACCTACACTTCAGTTAAAGGTGTATATGACAGTGCAAGCTATAATCCTCAAACTGGCTCTTCAGGTTTTGGCGTGGTGCCCAATTTAAATAAGCCTGATTCTGTGTCCAATACTAGAGGTCAACCCCAAGGCACTCCTGTATCTTCAGTCAATAGTgaaagtcttgtttctagttctgTGTCCACTGAGGTCGATACAACAGGAAGCAATGAGTCTCTACCCACTTCAGCGTCACTGCAGACTACTCAAACCTGGTACCAGTCTTTGCCCTCACCCAGTGGTTCACAGTCAGCACAAGTCAGCTATCAGTCTGTTCCCCAATCCAGTGGTCTGCAGTCAACACCAACCTGGTTCCAGTCTATGTCCCAGCCTAATACTGCACA

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:1905516 positive regulation of fertilization biological_process
GO:0009566 fertilization biological_process
GO:0035803 egg coat formation biological_process
GO:0043900 regulation of multi-organism process biological_process
GO:0043902 positive regulation of multi-organism process biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0080154 regulation of fertilization biological_process
GO:0007281 germ cell development biological_process
GO:2000241 regulation of reproductive process biological_process
GO:2000243 positive regulation of reproductive process biological_process
GO:0010452 histone H3-K36 methylation biological_process
GO:0007338 single fertilization biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0007340 acrosome reaction biological_process
GO:0009988 cell-cell recognition biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0060046 regulation of acrosome reaction biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0035804 structural constituent of egg coat molecular_function
GO:0004534 5'-3' exoribonuclease activity molecular_function
GO:0032190 acrosin binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163130

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008406 lncRNA upstream 358554 29207886 ~ 29208193 (+) True XLOC_003520
TCONS_00008631 lncRNA upstream 730048 28797267 ~ 28836699 (+) True XLOC_003519
TCONS_00008405 lncRNA upstream 903351 28662904 ~ 28663396 (+) True XLOC_003518
TCONS_00008630 lncRNA upstream 923047 28637462 ~ 28643700 (+) True XLOC_003517
TCONS_00008629 lncRNA upstream 949788 28547034 ~ 28616959 (+) True XLOC_003514
TCONS_00008407 lncRNA downstream 19345 29590873 ~ 29591196 (+) True XLOC_003524
TCONS_00008632 lncRNA downstream 333720 29905248 ~ 29906829 (+) True XLOC_003530
TCONS_00006903 lncRNA downstream 407729 29979257 ~ 29981972 (+) True XLOC_003532
TCONS_00006909 lncRNA downstream 503684 30075212 ~ 30078971 (+) True XLOC_003533
TCONS_00008633 lncRNA downstream 519627 30091155 ~ 30103837 (+) False XLOC_003534
TCONS_00006891 mRNA upstream 26714 29537756 ~ 29540033 (+) True XLOC_003522
TCONS_00006889 mRNA upstream 935405 28620683 ~ 28631342 (+) True XLOC_003516
TCONS_00006888 mRNA upstream 946936 28617564 ~ 28619811 (+) True XLOC_003515
TCONS_00006879 mRNA upstream 1051769 28476298 ~ 28514978 (+) True XLOC_003512
TCONS_00006876 mRNA upstream 1142561 28218141 ~ 28424186 (+) False XLOC_003510
TCONS_00006894 mRNA downstream 100133 29671661 ~ 29677714 (+) False XLOC_003525
TCONS_00006895 mRNA downstream 100141 29671669 ~ 29677693 (+) True XLOC_003525
TCONS_00006896 mRNA downstream 167820 29739348 ~ 29755142 (+) True XLOC_003526
TCONS_00006897 mRNA downstream 199438 29770966 ~ 29786528 (+) False XLOC_003527
TCONS_00006898 mRNA downstream 199438 29770966 ~ 29790222 (+) True XLOC_003527
TCONS_00006890 other upstream 214526 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006865 other upstream 2046174 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 2952160 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 3488686 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 4083777 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006949 other downstream 1400506 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 1403243 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 1443991 31015519 ~ 31024572 (+) True XLOC_003549
TCONS_00006967 other downstream 2053643 31625171 ~ 31671413 (+) False XLOC_003561
TCONS_00006968 other downstream 2075416 31646944 ~ 31668072 (+) True XLOC_003561

Expression Profile

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