RNA id: XM_039777648.1


Basic Information

Item Value
RNA id XM_039777648.1
length 1657
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120544092
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28348616 ~ 28356555 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGATAGGTCAGGGTGTCCTTCCACACGTGTTTGCTGTAAGCTTCCAGAAGAAGCAGTAACGGGTAGTTAGCCGGTTGTTGGGCTCTGTCAAACTAATTTATTTGTCGTTACGCGCCTTAATATTTTCATACAGTCATGCTAAAGTCAGTTGTCCGTGCGGTGGGAGCCGCTGTTCGCCTTTCTTCAGCCACCACGTCCACAGCCAGAGCTCTGCCACTCAGCTGCCTGACACTGCGCTCTCCAAGTTCGGCAACAACGCGGCCCTTCACCCGGTCTCTCTGGATGCTGAATAACAACGGAGCCTCGTCAGGGTACCGGCCaaaactgtttagttcaaaaatgTTGAATCCCTCGGTATCGTGTGGATGTGGAGGACTGCACACAGAAGGTGACAAAGCATTTGGCGATTTCCTGTCTGATGAaatcaaagaggagaggaagatccaGAAAAGCAAAGTCCTTCCTAAGATGTCTGGAGGATGGGAACTGGAGATGAACGGCACCGAGGCCAAACTCACGAGGAACGTTGCTGGAGAAAAaATCACGGTCACATTCAATGTCAATAACAGCATTCCTCCTAACTTTGAGGAAGAGGCAGAACAAGGACAGCAGAAGTCAGCGGAAGAAGAGgcAGACATTGTGTCAACACCCAACTTTGTTGTTGATGTAACAAAACAGGGTGCAAAACATTCCTTGGTGTTTGACTGCCATTTTCCTGAAGACGAGATGAGTCATGgggaaggagaagaggaaagcGACATCTTTGCCATTCGTGAGGTCAGTTTCCAACCTGAGGGAGACTCGGAGTGGAAGGAGACCAGCTATACACTCAACACAGACTCTCTGGACTGGGCTCTGTATGACCACCTGATGGACTTCCTGGCTGACCGGGGGATTGACAACACCTTTGCTGATGAACTGACTGAGCTGAGCACCGCCGTCGAGCATCAAGAGTACATCAAGTTCCTGGAAGACCTCCAAGGCTTCATCAAATGTAACTAATGTTAGATTTAAGCTAAATTTCACTTTTCCGCTATACCCATCCTGGCAAAGTTGGAGGTATGGCATTAACGATAAGATGAAAGCGAATGTTGCAGCACTGATCGACTGATGCCTTTGGCACTCTAAAGAGACTGATGAGTACTTGCTTAAGTGTCTGTGACATTGAGCCCTGTTGCCAGCAAATGTCTTCTTTATTAAAATGTGACTTTATTTTTCTGTAACTTAAATTATATAGTTTAAATCAAATAATGAAGGTCACGACTGTGCAGAAACCATCAACATAAGAATTGTCTCTTAATTGTAGAGTTCCCGTTTTAACTGCAGCGGTATGATATGATCCAGTCAGTATTTGTGAATGTCCAGCTATCCTAAAGCCAATAAATGGGCACCTTGTCAAGATGTGaactcaaaacaaaaaattcCACGAAATGTTAACGGTTTACACAATCAGTCCTCACTTCAACaaatgtgacattttctttgtttaaagctGGAGTCTTACTTCTAGCTGGCTTAGCAAGGGAGTTGATGTTGACGCCTAGTGATCGGACTCTGTCAGACTATAATATGTGAAGTCTATATTTGAATGGCATACATGTGGATGTCTACAGAGAGAATGAAAGATCAGTGTTCAATAAAACTGtttcatattata

Function

GO:

id name namespace
GO:0005759 mitochondrial matrix cellular_component

KEGG:

id description
K15414 C1QBP; complement component 1 Q subcomponent-binding protein, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229750 lncRNA downstream 17645 28330652 ~ 28330971 (-) True G169402
TU229747 lncRNA downstream 113667 28234590 ~ 28234949 (-) True G169399
TU229726 lncRNA downstream 144863 28163135 ~ 28203753 (-) True G169387
TU229716 lncRNA downstream 294607 28047607 ~ 28054009 (-) False LOC120544668
TU229620 lncRNA downstream 415754 27932292 ~ 27932862 (-) False LOC120544024
TU229767 lncRNA upstream 456 28357011 ~ 28357377 (-) True G169417
TU229804 lncRNA upstream 40425 28396980 ~ 28399180 (-) True G169447
TU229900 lncRNA upstream 343266 28699821 ~ 28704621 (-) True G169524
TU229929 lncRNA upstream 396720 28753275 ~ 28755551 (-) True G169550
TU229931 lncRNA upstream 400988 28757543 ~ 28761645 (-) True G169551
XM_039826549.1 mRNA downstream 1130 28314169 ~ 28347486 (-) False LOC120575713
XM_039826547.1 mRNA downstream 1130 28314169 ~ 28347486 (-) True LOC120575713
XM_039826548.1 mRNA downstream 1131 28314169 ~ 28347485 (-) False LOC120575713
XM_039826551.1 mRNA downstream 35483 28219395 ~ 28313133 (-) False srrm3
XM_039826550.1 mRNA downstream 68915 28218961 ~ 28279701 (-) False srrm3
XM_039777646.1 mRNA upstream 2222 28358777 ~ 28367461 (-) True dhx33
XM_039777647.1 mRNA upstream 2222 28358777 ~ 28367167 (-) False dhx33
XM_039778141.1 mRNA upstream 42812 28399367 ~ 28470511 (-) False camkk1a
XM_039778140.1 mRNA upstream 42812 28399367 ~ 28470511 (-) True camkk1a
XM_039777281.1 mRNA upstream 119358 28475913 ~ 28539128 (-) True atp2a3
XR_005642041.1 other downstream 1126 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 125366 28217243 ~ 28223250 (-) True srrm3
XR_005636427.1 other downstream 320839 27930539 ~ 28027777 (-) False LOC120544024
XR_005636444.1 other downstream 618468 27719805 ~ 27730148 (-) False gusb
TU229438 other downstream 829632 27515892 ~ 27518984 (-) False emc6
TU229887 other upstream 298602 28655157 ~ 28664051 (-) False ube2g1a
TU229954 other upstream 447830 28804385 ~ 28808430 (-) False atp5l
TU230221 other upstream 1405894 29762449 ~ 29796427 (-) True LOC120544028
XR_005636389.1 other upstream 1526251 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 1589113 29945668 ~ 29948932 (-) False map6a

Expression Profile