RNA id: XM_039777812.1


Basic Information

Item Value
RNA id XM_039777812.1
length 1079
RNA type mRNA
GC content 0.47
exon number 2
gene id ptrh2
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28875990 ~ 28877885 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaattgtatttctttttaagtcGAGGTGCTATGGCGTCATCACCAAGAGACCCATAAAGATGAGGAAGCTTCAGTTATACTGCTAGCACGTTGAACAAACCAGCAGGTTAACAATATGGACTTGCTATACGGTCCATTGAGCCTGGGTGTAGTAGCAGGACTGGGCTGTGGGCTCTTGCTCGGTTGGCACCTTCGGGCTCGCTTGGGCCCGACCTCCAAAAGCCTGATGGCAGCGATGGGGAACGGCACTGGTGAAGCAAGTGTGATGGGCGAAGGGGGCGAGTTCAAGATGATACTAGTGGTCCGAAATGACCTGAAGATGGGTAAAGGGAAGGTGGCTGCCCAGTGCTCCCATGCTGCTGTAGCAGCTTACAAACAGGTTCAACGCAGGAACCCCGAGCTTCTCAAACAGTGGGAGTACTGCGGCCAGCCCAAGGTGGTGGTGAAGGCCCCTGATGAGGACACCCTGATTGATCTGCTGGGCCATGCCAAAGAAGTGGGGCTTCCCGTCAGCCTGATTCAGGATGCAGGAAGGACACAAATTGCGCCCGGATCCCGCACTGTGCTGGGTATCGGTCCAGGCCCAGCTGATCTGATCGATAAAGTCACTGGAGACTTGAAGCTCTATTAGAGTCCCAGCTTGCATCTGTCTGACTTGCATACAATGTCTTTGTTGTTAGAACTATTTGCCATATAAACTAAGTTGGGCTACCATgagtttatattttttataaaacaatTGACTTAATTACATAAGTTAACTACTTTTTTGGGGGCAGTTTTGGACATGTATGCCTATCACATTTGTTGACTCTTGAAAAGCAGTAAAAACCGCTTCTGTGACCGAGGCAGAAACACCACAAACACTGTTCATATTCCGTGTTCTGTTCAGTCCGGCTCAGGCCTGTCTGAAGACCTAATGCTCAGAGGACACCTAtacattattattgttaatCTCATTAGAAACCCAGGACAATAAAAATGACTTTTTCAATAAGACTTTTTCTTTCCTTGTTACAGCAGGATTAGCTTATTATgttaactgaaaacattaaagGGAAACTTTCCTGATTCTAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG:

id description
K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230030 lncRNA downstream 8902 28865481 ~ 28867088 (-) True G169620
TU230020 lncRNA downstream 26877 28844424 ~ 28849113 (-) True G169612
TU229931 lncRNA downstream 114345 28757543 ~ 28761645 (-) True G169551
TU229934 lncRNA downstream 114345 28757782 ~ 28761645 (-) False G169551
TU229930 lncRNA downstream 114345 28758134 ~ 28761645 (-) False G169551
TU230051 lncRNA upstream 68425 28946310 ~ 28946656 (-) True G169640
TU230059 lncRNA upstream 121595 28999480 ~ 28999737 (-) True G169648
TU230092 lncRNA upstream 271199 29149084 ~ 29150478 (-) True G169678
XR_005636547.1 lncRNA upstream 790497 29668382 ~ 29678865 (-) True LOC120544741
TU230211 lncRNA upstream 797531 29675416 ~ 29678834 (-) False LOC120544741
XM_039776705.1 mRNA downstream 60432 28811383 ~ 28815558 (-) False pdzd3b
XM_039776704.1 mRNA downstream 60432 28811383 ~ 28815558 (-) True pdzd3b
XM_039778674.1 mRNA downstream 67549 28804378 ~ 28808441 (-) True atp5l
XM_039778637.1 mRNA downstream 84872 28785102 ~ 28791118 (-) True ftr83
XM_039778676.1 mRNA downstream 93129 28774813 ~ 28782861 (-) True ruvbl2
XM_039778212.1 mRNA upstream 93583 28971468 ~ 28977378 (-) False rnft1
XM_039778210.1 mRNA upstream 93583 28971468 ~ 28977378 (-) True rnft1
XM_039777713.1 mRNA upstream 829322 29707207 ~ 29748583 (-) True cxadr
XM_039777527.1 mRNA upstream 877842 29755727 ~ 29761675 (-) False btg3
XM_039777528.1 mRNA upstream 877842 29755727 ~ 29761633 (-) False btg3
TU229954 other downstream 67560 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 211939 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 528500 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 652740 28217243 ~ 28223250 (-) True srrm3
XR_005636427.1 other downstream 848213 27930539 ~ 28027777 (-) False LOC120544024
TU230221 other upstream 884564 29762449 ~ 29796427 (-) True LOC120544028
XR_005636389.1 other upstream 1004921 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 1067783 29945668 ~ 29948932 (-) False map6a
TU230433 other upstream 1428964 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 1533366 30411251 ~ 30414693 (-) False si:ch73-1a9.3

Expression Profile