RNA id: XM_039778453.1


Basic Information

Item Value
RNA id XM_039778453.1
length 2375
RNA type mRNA
GC content 0.51
exon number 7
gene id wnt11
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30214539 ~ 30228165 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGGGATTTAAAGCCGAGTCTGTCCCACTcagtctcactctctctcctctcctcggacctctccctctctctccctctctctctctctctgtgtgtgtctgtcccactcacacacacacacgctcacacactcaACGACACCGCTGCGATAGGCTACACACACCATGCGTACCTGTCCGGAGCTATTCTACCACCCCATGCTGGATTTTACCCCCGCATCTGGCTGATACCGAGACAGACACCGCTCTGAAAGGATATTCCGACTGCAgactttatttttcttctttcttgtccgttttttgttgttgttgttgttcaacGTGGAGAGCCGAGAGTCACGGCAAAGGGATTAGAAGAGGAGGCCGTGCCATGACAGTTGACTTTTGAGTCGGAGCCAGGAAGCCCAACAGCCCCAACGTATTTGTGTCCTGTTGTGAGCCCGGAGCCTCTGTCCAACCATGAGGAGCGGCTCTCATGTCCTGCCTCTGGGTGTGCTCACGGCTGTGCTGCTGCAGGTCTGCTCGGGCATCAAATGGCTGTCGATATCACACGCCCCTTCATCTTTACACATCAACCAGACCCAACACTGTAAGCTGCTGCACGGCCTCGTGTCCTCCCAGGCTCAGCTGTGCCGCAGCAACCTGGAGCTCATGCAAACCATCATCACCGCTGCCCGCGAAGTCAAGAAAACGTGTCAGAAGACCTTCTCTGACATGCGTTGGAACTGCTCGTCCATCGACATCCCCCTCGATGCTCCGAAGTATCGGCCAGACCTCGACCGAGGAACAAGAGAGGCTGCATTTGTGTACGCCCTGTCCGCAGCAACCATCAGCCACACCATAGCACGGGCGTGCACGTCTGGAGATTTGCGGCTGTGCTCGTGCGGTCCTATTCCTGCGGAGATCCCCGAGCCTGGCTACCGCTGGGGTGGCTGCGCCGACAACCTGCACTACGGTTTGATCATGGGCTCCAAGTTCTCTGATGCGCCCATGAAGATGAAACGCGCAGGCTCCCATGCCAACAAACTGATGCACCTACACAACAGTGAAGTCGGAAGACAAGCGCTGAGAGACGCGCTGGTGATGAAGTGTAAATGTCACGGTGTGTCCGGCTCCTGCTCCATAAGGACCTGCTGGAGAGGCCTGCAGGACCTGAGGGAGATCGCCATGGACCTGAAGACCAAGTATCTGTCTGCCACCAAAGTTGTCCACCGGCCCATGGGGACACGCAAGCAGCTGGTGCCCAAAGACATCGACATCCGGCCGGTGAGGGAGAACGAGCTGGTCTACCTGCAGAGCTCCCCAGACTTCTGTGCTAAGAATGACAAACAGGGCTCTGTTGGCACACAGGACAGGCAGTGCAACAAAACCTCCCTGGGCAGTGACAGCTGTGACCTGATGTGCTGCGGCCGCGGCTACAACCCGTACACGGAGAAGCTGGTGGAGCGCTGCCACTGCAAGTACCACTGGTGCTGCTACGTCACCTGCAAGAAGTGCGAGCGGATCGTGGAGAGATACGTGTgcaaatgagtgtgtgtgccgCTGCCGCGCCCCGCCAGCAGTCCTCTACGTGTACCCAGCCACAGATTAACCAAAGCACTACAATACCAAGAAAAGGCTTACTTTTGTCATAAGCTTTAGCATGTGTATCTCAACGAAGAGGGGGGGGTCTGTTCTTGTGTCAGTATCATTTTTTTGTATCTGAATCTCCAAAGTGCCAATTGGGCTTctacgcttttttttttttcactcgcTTCACAAACCTGGACGTGGAGAGCGTGGCGACAGTGCCAGTTTACGTGAAGACCGCCGTCCTCCTGGGTATCTCCTTTTGTCTTGTTAATGATTATAAATCCCCCTAACAGGGATGTTGAAAGTCTATTTTATTATAtctctaataaaaaaaagaaataatattgGATTTTATGCTGGAGGAGAGGGATTGTCTTTTCCCCTCACTAGACTTATGTTTGCCTTTATTCCACGGAAATCCAAGGGTTCTGATGGAGCCGCGTGGTACTTTTTTAGGTACTCTTACAACTTTTTTTGTCCCTCTGAAGCAATGGACAATAGGTGGGGGAAAAGGAACACAAAAAAAGGGAACTTCAAGTACTTTTCAATCATGGAACATTTCTGTGGTTGACGTTTTGGACTCTCGCCATGTGTCCTGTGTGGATCTCGACATGCCTGCATCCCTGTGGATTGAGAGAAGAGCATTATCTCCTTCATGTCTGACATGCAGTTCAAAATATATTCTATTTTTCGGAGCATATGAGCTGAACTCGTGGATTTTTGTAAACCACTCTTGTGTGGATGTACATACTGTTATTTTGTATactgaaataaagaaagaagtATTTATAAAATAGTGAAA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K01384 WNT11; wingless-type MMTV integration site family, member 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230408 lncRNA downstream 99120 30046141 ~ 30115419 (-) True G169905
XR_005636545.1 lncRNA downstream 288086 29925067 ~ 29926453 (-) True LOC120544726
TU230223 lncRNA downstream 424989 29778692 ~ 29789550 (-) True G169766
XR_005636430.1 lncRNA downstream 446995 29763096 ~ 29767544 (-) False LOC120544028
TU230416 lncRNA upstream 36385 30264550 ~ 30266434 (-) True G169912
TU230427 lncRNA upstream 54915 30283080 ~ 30284166 (-) False ei24
TU230425 lncRNA upstream 54958 30283123 ~ 30284402 (-) False ei24
TU230426 lncRNA upstream 54958 30283123 ~ 30284166 (-) False ei24
TU230438 lncRNA upstream 123708 30351873 ~ 30365637 (-) True G169927
XM_039777965.1 mRNA downstream 243459 29946059 ~ 29971080 (-) False map6a
XM_039777967.1 mRNA downstream 243460 29946059 ~ 29971079 (-) False map6a
XM_039777966.1 mRNA downstream 243460 29946059 ~ 29971079 (-) False map6a
XM_039777968.1 mRNA downstream 243460 29951850 ~ 29971079 (-) False map6a
XM_039777971.1 mRNA downstream 243461 29949337 ~ 29971078 (-) False map6a
XM_039777451.1 mRNA upstream 10941 30239106 ~ 30254350 (-) False si:dkey-250d21.1
XM_039777450.1 mRNA upstream 10941 30239106 ~ 30254350 (-) True si:dkey-250d21.1
XM_039777452.1 mRNA upstream 27896 30256061 ~ 30261194 (-) False thap12a
XM_039777453.1 mRNA upstream 27896 30256061 ~ 30260963 (-) True thap12a
XM_039777454.1 mRNA upstream 39432 30267597 ~ 30281116 (-) True stt3a
TU230376 other downstream 265607 29945668 ~ 29948932 (-) False map6a
XR_005636389.1 other downstream 312602 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 418112 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1406109 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 1550488 28655157 ~ 28664051 (-) False ube2g1a
TU230433 other upstream 78684 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 183086 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 509890 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 600902 30829067 ~ 30829943 (-) False LOC120543890
TU230602 other upstream 621154 30849319 ~ 30851013 (-) False LOC120543892

Expression Profile