RNA id: TCONS_00006900


Basic Information

Item Value
RNA id TCONS_00006900
length 1248
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_003529
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29856032 ~ 29877090 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGCGCACAGGAAGCGCAGGAGAGGAAGTATCACCGGATCACCATATAAACCCCATTCACGAAAGTATTCGTCAAAATTGGACACCTGCGATTCAAAAATGATTTGATATCATGTCTGACGCCACATTAACTCCCGTTGTAAAGTTTCTGGGCGACTCTCCGGAGCGCAGCAACACGAGCGCCGTACCCGAGCATCCACACTTGCATTCGGGCATCATCATCGCCACCGTTTACGCGCTCCTTATCACCGCTGGACTAATAGGCAATGTGACGCTAATTAGGACGTTTTGCATTGTCAAATCCATGCGCAATGTGCCTAATCTGTTCATGTCGAGTCTCGCTCTCGGTGACGTGCTGCTGCTGGTCACCTGCGCGCCCGTGGATGCCAGCAAGTTCCTGGCGGATGAGTGGCTCTTCGGGCGGATGGGTTGCAAACTCATCCCGTTCATCCAGCTGACTTCGGTTGGAGTGTCGGTGTTTACCCTCACAGCGCTGGCAGCGGACAGATACAAGGCCATTGTCAAACCAATGGATATCCAGTCGTCTAAAGCTTCACTAAAGGTCTGTCTGCGGGCCGCTTCAATCTGGATGCTCTCTATGGTCCTGGCCATCCCCGAGGCCGTGTTCTCTGATCTTCACACCTTCCACATCCCTCAAACCAATGAGACTTTTAAAACATGTGCGCCGTACCCTCACGCTGGAGACCTGCACCCCAAAATCCATTCCATGGCCTCCTTTCTAATTCTGTACATCATTCCTCTCTTCATTATCTCTGTGTACTACATCTTCATTGCAAGGAGTCTGATTCAGAGTGCCAATAACATGCCTGTTGAGGGAAACACACACATTCGGAGACAGGTTGAGTCACGGATGCGGCTCGCCAAGACAGTGCTGGTGTTTGTGGGTCTGTTTGCCATCTGCTGGCTCCCCAACCATGTGATTTACCTCTACCGCTCCTACCATTACACAGAAGTGGACACGTCAATGGCTCATTTCATCGCCAGTGTATGCGCACGTATCCTCGCCTTCACCAACTCCTGCGTGAATCCTTTCGCTCTTTACCTCCTCAGCAAATCCTTTAGGAAGCAGTTCAACAAGCAGCTTTGCTGTTGCTGTCCGTCCATCTCTCTGCGTTCACAAAGCAGCCGGCGTCACAACACACGACTCAGTTCACTCAAAAGCACACAGAATCACTCAGTGGCCAGTTTCAGCCTCGTCAATGGTAATGCTGTATACCATTAGAGATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-081015-4 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GRPR (gastrin releasing peptide receptor).

Ensembl:

ensembl_id ENSDART00000079150

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008407 lncRNA upstream 264836 29590873 ~ 29591196 (+) True XLOC_003524
TCONS_00006892 lncRNA upstream 288398 29566746 ~ 29567634 (+) False XLOC_003523
TCONS_00008406 lncRNA upstream 647839 29207886 ~ 29208193 (+) True XLOC_003520
TCONS_00008631 lncRNA upstream 1019333 28797267 ~ 28836699 (+) True XLOC_003519
TCONS_00008405 lncRNA upstream 1192636 28662904 ~ 28663396 (+) True XLOC_003518
TCONS_00008632 lncRNA downstream 28158 29905248 ~ 29906829 (+) True XLOC_003530
TCONS_00006903 lncRNA downstream 102167 29979257 ~ 29981972 (+) True XLOC_003532
TCONS_00006909 lncRNA downstream 198122 30075212 ~ 30078971 (+) True XLOC_003533
TCONS_00008633 lncRNA downstream 214065 30091155 ~ 30103837 (+) False XLOC_003534
TCONS_00006917 lncRNA downstream 372961 30250051 ~ 30251936 (+) True XLOC_003536
TCONS_00006899 mRNA upstream 61724 29790626 ~ 29794308 (+) True XLOC_003528
TCONS_00006898 mRNA upstream 65810 29770966 ~ 29790222 (+) True XLOC_003527
TCONS_00006897 mRNA upstream 69504 29770966 ~ 29786528 (+) False XLOC_003527
TCONS_00006896 mRNA upstream 100890 29739348 ~ 29755142 (+) True XLOC_003526
TCONS_00006894 mRNA upstream 178318 29671661 ~ 29677714 (+) False XLOC_003525
TCONS_00006901 mRNA downstream 88732 29965822 ~ 29972154 (+) True XLOC_003531
TCONS_00006902 mRNA downstream 98740 29975830 ~ 29981758 (+) False XLOC_003532
TCONS_00006904 mRNA downstream 122324 29999414 ~ 30077305 (+) False XLOC_003533
TCONS_00006906 mRNA downstream 123724 30000814 ~ 30087019 (+) False XLOC_003533
TCONS_00006905 mRNA downstream 123724 30000814 ~ 30087019 (+) False XLOC_003533
TCONS_00006893 other upstream 284504 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006890 other upstream 503811 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006865 other upstream 2335459 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 3241445 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 3777971 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006949 other downstream 1094944 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 1097681 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 1138429 31015519 ~ 31024572 (+) True XLOC_003549
TCONS_00006967 other downstream 1748081 31625171 ~ 31671413 (+) False XLOC_003561
TCONS_00006968 other downstream 1769854 31646944 ~ 31668072 (+) True XLOC_003561

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_05581415_05587605.mRNA True 1346 mRNA 0.50 3 CI01000306 5581268 ~ 5587661 (+)