RNA id: XM_039778678.1


Basic Information

Item Value
RNA id XM_039778678.1
length 1802
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120544725
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 29920887 ~ 29923512 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaaatgagtttgacaccccgggcttagatcattaaaatagggcccttaatgttAATAGCCTGAAATTCATATTTGTAGAAGAGGCAAGAATGCTATTACATTCAAAACCTTTGCTTTTGCAGGAGAGCTGTAAGTAAAGCAACGAAGGAGTTTCATGCCTTTGGGATTGTGTCGCTCTTCCCATTTTTGAAAGACCCATACTCAAAAAAGGGATATGAACATTTCTATGACATGCAGAGCAACAAAGGCTTTCTTGAGTGGCGTATAAAAACTGTGCAGCGTCAATCCAAAACCTCATCTGCATCCCGTAACAGAGTGGAGCTGAAAGGAGGTCCCACATCGTCAAGAACATCTGGATCCATAGATGACCAGCAAACAGGAGATGAATGTATGGAGGCCATGTCTCTTCTTCACCACATTACTGACCGTGACTTTGTCTTCCAGAAGATGAAAGAAACATTCCATTATCGGCAAAAGGTGCTCCATGACCCACAGCAATCGGCAGACATACTTCAAATGTTTCCTCGTTTCTTGGACACTAAGGGACTGATTTTGCAAGACTTCTTGATGATGTTTGGAGCAGAGACTGCATCCAGGTTCCTGGAAAAATGGAACACCAGTTTTAAAGACAAAGTAATTCAAGAGGCCAGGACCCTCAGAGAGACGTCTCTCCTGaaaaaacagctgaaatctGCCCTGAATGAAGAATCTGACACTGCTGATGAGCCAGAGTGGGACAGCGACATGGCATCTCTTCTTGTATTGCTCCATCTGCTAACTCCTCAACCAGCTGGAAGGAAGCGGCCCAAAAAGATCAGTGTTGGAGAGGCAACTGATCATTTGGTTAAATTTCACAAGTCTTGCCACAGCCTTGAAGAACATCTCATGACGATAGAAGGAAACCCCCAGCCGTATCTGCTGGCCACGGGGACTTCAAAAGCACAGGTTTTCACCTTCTACATAGTCTTGGATAGAAAGCTTCTTCCATGTCAGTCTTCTACATCTCTGGGTGCATTTGATGAGCTGTTCAAGTCCCATTTTGTTTTCAGTGTGCAATATGATGATGCTCTGTCGAGCTTGTACAGATTCCTGCAGACTACTCTGTACAATATCGATATAGGGACAACAGAAGAAACTCCAAGAGTCAAAGAGTTAAGAGCAAAGCTGTTAAACAAGCACTAATTTGCTAAAGCAGCAAACATGTTCAGATGTATCCTTTGTGCGTCATCCTTTGATACAGTTTTACTTCTGTTCAGGCACCTCAAATTAATTCATGCAATGTATTCTGGGAAAAAATTTGAGACTAAAATGTGGTCAAATAGGATGTTGCTTGCAATTTTCAAGTTATTCTGGATTTAGAAGACATCTAATTAAGATACATGATCCTACTGACAACACATGTGTACCTCATGAAACCCCTTCCAACTATGACACTCAACTGCACAATCATTCTGAGTGCTTAAATGATGAAACACCCTCTACTTCATCACAATGCCAAAATGTTGAAGCAGGCCCTTCACTGTCAACTCACAGCAAAGATATGTGTGCCTCCATCATAGCCAAACTTTTGGGAAGCGGTGTACCAAATACTGTAGTTCTTTCTACAATTGAAAATTTACAGGAATTTGTGGAAGATTTGCAGTCTAATATTCAGGACCAAGTATTGAACTTACTTCCAGCTGACAATCCCTCTAGATCAGCCGTAGAAGAGCTTTTAAAAGTATGGACAACCCTTTTAGCCAGTTGAATACGGATAGCAAATGGAAGAAGTATTTCAGGGAAAAATGGGATATTGTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230223 lncRNA downstream 131337 29778692 ~ 29789550 (-) True G169766
XR_005636429.1 lncRNA downstream 153311 29763096 ~ 29767576 (-) False LOC120544028
XR_005636545.1 lncRNA upstream 1555 29925067 ~ 29926453 (-) True LOC120544726
TU230408 lncRNA upstream 122629 30046141 ~ 30115419 (-) True G169905
TU230416 lncRNA upstream 341038 30264550 ~ 30266434 (-) True G169912
TU230427 lncRNA upstream 359568 30283080 ~ 30284166 (-) False ei24
TU230425 lncRNA upstream 359611 30283123 ~ 30284402 (-) False ei24
XM_039776864.1 mRNA downstream 8220 29904528 ~ 29912667 (-) False zbtb21
XM_039776865.1 mRNA downstream 10307 29904528 ~ 29910580 (-) True zbtb21
XM_039776867.1 mRNA downstream 18950 29882806 ~ 29901937 (-) False LOC120543707
XM_039776866.1 mRNA downstream 18950 29882807 ~ 29901937 (-) True LOC120543707
XM_039776868.1 mRNA downstream 18950 29883759 ~ 29901937 (-) False LOC120543707
XM_039777965.1 mRNA upstream 22547 29946059 ~ 29971080 (-) False map6a
XM_039777967.1 mRNA upstream 22547 29946059 ~ 29971079 (-) False map6a
XM_039777966.1 mRNA upstream 22547 29946059 ~ 29971079 (-) False map6a
XM_039777971.1 mRNA upstream 25825 29949337 ~ 29971078 (-) False map6a
XM_039777968.1 mRNA upstream 28338 29951850 ~ 29971079 (-) False map6a
XR_005636389.1 other downstream 18950 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 124460 29762449 ~ 29796427 (-) True LOC120544028
TU229954 other downstream 1112457 28804385 ~ 28808430 (-) False atp5l
TU229887 other downstream 1256836 28655157 ~ 28664051 (-) False ube2g1a
XR_005642041.1 other downstream 1573397 28314437 ~ 28347490 (-) False LOC120575713
TU230376 other upstream 22156 29945668 ~ 29948932 (-) False map6a
TU230433 other upstream 383337 30306849 ~ 30310587 (-) False LOC120543993
TU230450 other upstream 487739 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230595 other upstream 814543 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 905555 30829067 ~ 30829943 (-) False LOC120543890

Expression Profile