RNA id: XM_039826406.1


Basic Information

Item Value
RNA id XM_039826406.1
length 1897
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC120575605
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30702500 ~ 30709341 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAAGCATGAGGTCTTGCAGTCTGTGCATCATCCTGAGCCTGGCGGTGGCAGTTTACTGCGTACCTGTATCACAAGTCACTGAGCAAGATGAACATGATGCAGAGAGCTACCTGAAGAAATTCTTCAACCTAACAGAGGAGAAAGGTCCCACTAGCAGACGTGGGGTCAGCGCGGTGAGCAGGAAGCTGAGTGAGATGCAGAGATTCTTTGGCCTCCGTATCACCGGGACTCTGGATGCTGACACCATGACGACGATGAAGAAGCCCCGCTGTGGCGTCCCAGACACCAACATTGCCAGTTTCTCCACGTTTGGAAAAAACCTCAAGTGGGAGAAAAACAGCCTTACCTACAGGATAGAGAACTACACACCTGACATGTCTGTGTCAGAGGTAGATGACTCCATAGAGAAAGCGCTGCAGGTTTGGGCCAAAGTCACTCCTCTGAGATTCACAAGAATCCAAAGTGGCACCGCTGACATCATGATCTCCTTTGGCCGCCAAGCACATGGTGATTTTTACCCCTTTGATGGCCCTGATGGCACTCTTGCCCATGCCTTCGCCCCGGGCACTGGCATTGGAGGAGACGCTCATTTCGATGACGATGAGAATTTCACTCTCCGCTCCACCAGAGGCTACGTCCTCTTCCTGGTGGCTGCCCATGAGTTTGGCCACTCCCTGGGCTTGTCTCACTCTGATGATCCTGGTGCTCTCATGTACCCTGTGTACTCATACAGAAACCCAGACACCTTTGTTCTGCCCCGGGATGATGTCAACGGCATCCAGTCTCTCTATGGTAGAAACTCTGTTAAGGATCCCTCTGTAGATAAACCTCAGCCCCCCACCACCCCTGATGTCTGTGATTCAACCATGGTCTTGGATGCTGTCACCACCCTGCGAGGAAAGATGCTCTTCTTCAAGGACAGCTTCTTCTGGCGGAGCTACCCTCAGAGCAATACACCTCAGCAAAGTCTCATCACAAACTTCTGGCCCAAAGCCCCCACCCACATCGACGCTGCTTATGAAAGCAAACAGTCAGACAGAGTCTTTCTCTTTAAAGATCGTAGAGTGTGGGCCTTCGCTGGCTATAATCTTGTGCGTGGCTACCCCAAAAAACTTTCCAGTTTTGGTCTGCCCAGAAGTGTGAAGAAAATCGATGCGGCCCTCTATGACGTGGAATCCGGCAAGACTCTGTTCTTTGTAGACCGCATTTACTACAGTTATGATGAGACCAGAAAGACCATGGACCAGGGATTCCCCAAGCTAGTGGATCAGACATTTTCCGGCCTGACCGGCAAGGTGACTGCAGCTCTCCAGTACAGAGGTTTTACTTACATCTACAGCGGACCGTACATGTTTGAGTACAGCCTGAGGACTGGGAGGTTGTTCCGGATGCTGAGGAACAGCTACTTCCTGCGCTGCACTAACTTCTAGAGCAGTTTACTGGCCAAGCTGTTTATGTAGCCACTGTGAATGAGAATGAATGTACACTAGCAGTGTTAAAACAGTACTTTTTAAGTAAAAATCTCTTATTCAAAATGGTATATTTTCAACATTTAATTGTATCAAATGCATTTCGCAAACATGCAGTATATAAATactgatattattttttttagatattgTACATATGTCGGTTATTTGTATGTGTACTTTGCAGTATTGAAGTTATGAGACTTTTCAGCCATCTTGGAAATTGTATATTTAGTCAAAGGTTTAATCAGAGGGTCATACTGTCAGGAAGCTCCTGATGGCCTCTGATTAGACTAATCAAGCAAGTCCATAGCATTGGACCTATTACTGCTGGTTATATTGCTGCTGTGCTTTACTGTATATTTGCAATCTAATGATATTGGTAACcttttataataaccatcaatAATAAATGGTAAGTTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230479 lncRNA downstream 249994 30450547 ~ 30452506 (-) True G169956
TU230457 lncRNA downstream 273444 30428848 ~ 30429056 (-) True G169941
TU230439 lncRNA downstream 314445 30387854 ~ 30388055 (-) True G169928
TU230438 lncRNA downstream 336863 30351873 ~ 30365637 (-) True G169927
TU230426 lncRNA downstream 418334 30283123 ~ 30284166 (-) False ei24
TU230604 lncRNA upstream 11601 30720942 ~ 30732082 (-) False LOC120575604
TU230607 lncRNA upstream 19661 30729002 ~ 30731888 (-) True G170054
XR_005636409.1 lncRNA upstream 79128 30788469 ~ 30791876 (-) True LOC120543896
TU230632 lncRNA upstream 178665 30888006 ~ 30889451 (-) False G170078
TU230633 lncRNA upstream 178665 30888006 ~ 30889575 (-) True G170078
XM_039777677.1 mRNA downstream 870 30697366 ~ 30701630 (-) True mmp30
XM_039777676.1 mRNA downstream 5759 30688426 ~ 30696741 (-) True acat1
XM_039777675.1 mRNA downstream 18812 30677099 ~ 30683688 (-) True tmprss2
XM_039777639.1 mRNA downstream 78107 30510724 ~ 30624393 (-) False dscama
XM_039826405.1 mRNA upstream 8874 30718215 ~ 30721256 (-) True LOC120575604
XM_039777253.1 mRNA upstream 28224 30737565 ~ 30830309 (-) False LOC120543890
XM_039777255.1 mRNA upstream 28224 30737565 ~ 30740608 (-) False LOC120543890
XM_039777254.1 mRNA upstream 42730 30752071 ~ 30830309 (-) False LOC120543890
XM_039777252.1 mRNA upstream 54651 30763992 ~ 30830309 (-) False LOC120543890
TU230450 other downstream 287807 30411251 ~ 30414693 (-) False si:ch73-1a9.3
TU230433 other downstream 391913 30306849 ~ 30310587 (-) False LOC120543993
TU230376 other downstream 753568 29945668 ~ 29948932 (-) False map6a
XR_005636389.1 other downstream 800563 29882806 ~ 29901937 (-) False LOC120543707
TU230221 other downstream 906073 29762449 ~ 29796427 (-) True LOC120544028
TU230595 other upstream 28714 30738055 ~ 30739267 (-) False LOC120543890
TU230603 other upstream 119726 30829067 ~ 30829943 (-) False LOC120543890
TU230602 other upstream 139978 30849319 ~ 30851013 (-) False LOC120543892
TU230664 other upstream 248160 30957501 ~ 30958498 (-) True G170098
TU231114 other upstream 1492368 32201709 ~ 32202206 (-) True G170463

Expression Profile