RNA id: TCONS_00006901


Basic Information

Item Value
RNA id TCONS_00006901
length 1744
RNA type mRNA
GC content 0.39
exon number 7
gene id XLOC_003531
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29965822 ~ 29972154 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCAAATGCAGCTTCCTCTTTCTACTAAATTCTCACATTGACTGGACTTCATAAAGCCGTGTGTCAGATTCCGGACTCACAAGTCCTTGTAATATCCACCGAGATCATCATGGCAGCCGAGGGAAGTCCAGTTTGTGGTGGGGTTAAGCTGTTCCACACTGAATGTGCTGGGAAACACTTGTATGAAGTGAAAGGTTTTTTAAACCACAACAAAGGAATGTTTACAAGCACGGGAGATAAACTCCTAATGATAAACAACACAAACGTGGAGGATCTGACTCCAACATCATTGGCTGATCTTCTGACTGAAGGATCCGCCTTACTTACGATACATCACCCAtccaaaaacaaatcaaatgaagAGTGTGAATCAGAGGAACTCCGTGTCGACAGCAAGGAGCGAACAGTCATGAGTTTCAGCCTGCTGATGGTGAGAGATGTGGAGTTGGAGGCAGATGTGATACCGGAATCAGATTCAGAGTGCGAAGATGAAATCGAAGACAAGCTTTTCAGTGACAAAAATCTGCTGATTGTCTCCATGGAAGATGCAAGCTTCAACATGGTTGTAGCTCGAGGTTGTGACCCTGACAACCCTTGCAATGACTGTGGAAAGACCAACTGCCAATTGAATGAAGTTGTCGTCTTGCCTACAAATGCTAAAATTAGCTCTTGTTCTGCAAAGGTTTTGcatttcaaaaaagaaaagaaaaacttgTTTTTGAAGAGTTTATTCAACGAAAAGTATGTCACACCAGATAATCGCCAAATATGTTTGAGTAGCACCATGTCAGCACCAATTACCATCTACTCTTACCGTGTCAACTCAGTGGACAATCCAGGTGTTCCTGTTGTGTTGAACTTCACTGGAACACAAAACTTTTTCAGCTGCACCACGAAGCAAGGTGCAGACACGAAGATTTTAACCGTTGTGTCTTACAGTAAGAGCGAGCTGCAAAAGATCTGCGCCGGGGACACAGAGAAATGGTCACTTGTGTTCTACAAGTCTTGTGGACCAGACTGTTTCCAACGGTTTGAGTCGGCTCTCCACAGAGGATGGTTTATCTGCACCAAAAATATTGCCAACAATGACGCGAATGTGTACATGGGCAAAGGTGTTGAGCGTGACAAACCACTCAACACCTTTTTCGTCATAATTGAGAGTGAGAAAGCGATTTGCTAAAAGCGTCACAGTGATGTAACGTTTTTGTGCAGTAGATGTATACTGTATGTCTTGCATTAAGAGTTATGATATTTTCTTTATGAGCTATTCTCTAATTAATGTCTTACAGACACAATACAGACACAATAAGCTGACATTACTATCTAACACGATCAAAAGCCTATAGTGCTTTATTAAAAGTCTGAATAAATTTTTTGGATTGGCAACTAATCGACAGGCATACTGGTCAGATTGGGGTTTGTTGGAGACTATTCAGGAATTTAGCTTTATGTTGTCACTTATTTCAATTCAAGCGTGATAAGGTTGTCTAAAAGAATTCAGCCTTTTCCAAAGAGTGTTGTGTTTTACTGCCGTTGCAGTATTGCGTAGATATGAATCATAATATTTACTgaagttgtttgttttatttaaccttGTTATATGCAGTTGTGTTTATCATGAGTGTCAtttttatattcagcttttaaatagatatttttgAAATCAGCatgtgtattttattgtattgataGAGGGCAtccacagggtcttaaaaagtctttaattaaaaaaatatatatatt

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-231 Predicted to enable cytokine activity. Predicted to act upstream of or within immune response and inflammatory response. Predicted to be located in extracellular space.

Ensembl:

ensembl_id ENSDART00000127049

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008632 lncRNA upstream 58993 29905248 ~ 29906829 (+) True XLOC_003530
TCONS_00008407 lncRNA upstream 374626 29590873 ~ 29591196 (+) True XLOC_003524
TCONS_00006892 lncRNA upstream 398188 29566746 ~ 29567634 (+) False XLOC_003523
TCONS_00008406 lncRNA upstream 757629 29207886 ~ 29208193 (+) True XLOC_003520
TCONS_00008631 lncRNA upstream 1129123 28797267 ~ 28836699 (+) True XLOC_003519
TCONS_00006903 lncRNA downstream 7103 29979257 ~ 29981972 (+) True XLOC_003532
TCONS_00006909 lncRNA downstream 103058 30075212 ~ 30078971 (+) True XLOC_003533
TCONS_00008633 lncRNA downstream 119001 30091155 ~ 30103837 (+) False XLOC_003534
TCONS_00006917 lncRNA downstream 277897 30250051 ~ 30251936 (+) True XLOC_003536
TCONS_00006918 lncRNA downstream 280786 30252940 ~ 30253555 (+) False XLOC_003537
TCONS_00006900 mRNA upstream 88732 29856032 ~ 29877090 (+) True XLOC_003529
TCONS_00006899 mRNA upstream 171514 29790626 ~ 29794308 (+) True XLOC_003528
TCONS_00006898 mRNA upstream 175600 29770966 ~ 29790222 (+) True XLOC_003527
TCONS_00006897 mRNA upstream 179294 29770966 ~ 29786528 (+) False XLOC_003527
TCONS_00006896 mRNA upstream 210680 29739348 ~ 29755142 (+) True XLOC_003526
TCONS_00006902 mRNA downstream 3676 29975830 ~ 29981758 (+) False XLOC_003532
TCONS_00006904 mRNA downstream 27260 29999414 ~ 30077305 (+) False XLOC_003533
TCONS_00006906 mRNA downstream 28660 30000814 ~ 30087019 (+) False XLOC_003533
TCONS_00006905 mRNA downstream 28660 30000814 ~ 30087019 (+) False XLOC_003533
TCONS_00006907 mRNA downstream 85608 30057762 ~ 30090019 (+) False XLOC_003533
TCONS_00006893 other upstream 394294 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006890 other upstream 613601 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006865 other upstream 2445249 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 3351235 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 3887761 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006949 other downstream 999880 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 1002617 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 1043365 31015519 ~ 31024572 (+) True XLOC_003549
TCONS_00006967 other downstream 1653017 31625171 ~ 31671413 (+) False XLOC_003561
TCONS_00006968 other downstream 1674790 31646944 ~ 31668072 (+) True XLOC_003561

Expression Profile

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