RNA id: TCONS_00006904


Basic Information

Item Value
RNA id TCONS_00006904
length 1910
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_003533
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29999414 ~ 30090019 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGATTTACACAAACGCAATGCTCTCCTACCTAATAAGTACACCCAATGCTAGTTGCCTGCTATGACCACCAGGTGGTGATGTcgctttaaatgtttaaaacttcAGCTGCTGATTCCTGATTCCACCACAAGAGGCTGCTCTACACACATCCGCGTGTATATAAATTCGCTCAAATGATTgcagatgtgttttatttattatcctttTAATTCAAAAATAGGGAGTAAACGATCTGGCCTCCACATCTGCTTACAGGTCTCAGGTCTGTCCACGCCGTTATATCAACAGTTCAGGTCAGCATGTGCTTTTGAACGGTGTTTTCTGGTCCTAAGCATCTGTAAGTCCTTGACAAAAGAGTGGATAAAGTTAACCGGAAAACCGCTGCACTGACGTAACTCTGCAAACCTTGCGGTTCCCAAACGGAACAGACACATTACGCTGTCACCTTTGTAGCAATTACAATGGAGCATTAATGGATTGTGAATGAACTTTTTCATTTCAGCAGATTGAAAAGATATACACGTCAACTGCCTATAGGGGAGACTATTGTGCCATAACGCAGGGTGAGTATCTCTAAGTTAACCAGGTTAATGTTGTTTAAATCCCCATGATCACCACGTCTTGAGGTGACTACAAGTTTTAATACAATACCCTGACAAATCAAATATGGTTGtactacaaataaaataaagcatatatttaaaaaaaaacatagtaattacaaattaacctttttgcttcaGCAACCATGTTTGTAGTACGGTAGTTTGAAAAATTGTAATTAGCATGCAAAACACACATAGTTACCACTGTTTTAATAGACCTGTGGTCAATATTAAGCGTCCAGAAGAgccatttttgcattttcatCAAGGTGTTCGAGTAATGAATAAACTGTATTATGTGTCAGAAATACCTTCTAGAATACGTGTGATAGGCCTCTGTAGATTATTTTATCCATTTTTAAAGCCTACTACGCGAAAGGTCTGGCttataaatattaatgacacATCTCATTGGATGCTTACAAAGCGACGTCATCGTGTTCCGATTAATATTCAACAGGTACGCCTTCGTCATAGTAGAGTGCGTAATTTCTCTCCGCTCCTAGCGTAAGTAGACCAGTCCATGTTTTTGCAAAGCCTCTCTCCATCCAACCTCAGCCTCAAAGCCCTGAAAATACCCAGTAGCCTACCAAAAGGCATCCAGAACCAGAGGAGGAGCAGAGATATTCACTGAGAAACCTCCATCCCCGTGCGATCTCCTCTAACGGGAGAACTGAAGCGATGGCGGGTTGCGCGGAGGATTTGTGGATTTTTGCTTGACACGCGCCAGAATCTTCTGCTGGATTAGTTGTTTGGTTTATTTATGGGGGATTTTCATTTACCTGCTGAAAAATGCCTTTTGCCAAACGGATCGTTGAGCCCCAGCTGCTGGTTAGACATCCCATCCCTAATGATGAAGGGTTACTGTTCGAGGATCTGTGCTCCATCACCAATGTGGCTCTATCCCGGACCCTGCGGCAGCTCTCCGACCTGTCCAAACACGCTTGCTCCTTATTTCAGGAGCTTGAGAACGAAATAGTGTCCACAAACCAACGGGTTTGGGCTTTGCAGAACAAAATAGGCAAAATTCAGCAAACCGCCAGTGCGCTGGATCCAAAAATGGAGGCTGTGCCGGTCTCGAATCTGGACATTGAGAGTAAACTGACGTCGCACTATCAGGCTCCATGGCATCAGCAACACAATCTGTTCCACACTTGCACACGGCCAGCGTGTCTGGAGGAGCTGCACCGACATGCCAAGCTCAACCTGCGGGCGCTGCACAGAGACCAGCAGCAGCGTCAGCGTTCAACCAGCAGAGAGCGCAGTCGGGTCACTATATCAATATCTGTGGCACCGCCAATG

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0002088 lens development in camera-type eye biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-090617-2 Predicted to be involved in cell differentiation and lens development in camera-type eye. Human ortholog(s) of this gene implicated in Nance-Horan syndrome and cataract 40. Orthologous to human NHS (NHS actin remodeling regulator).

Ensembl:

ensembl_id ENSDART00000161160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006903 lncRNA upstream 17442 29979257 ~ 29981972 (+) True XLOC_003532
TCONS_00008632 lncRNA upstream 92585 29905248 ~ 29906829 (+) True XLOC_003530
TCONS_00008407 lncRNA upstream 408218 29590873 ~ 29591196 (+) True XLOC_003524
TCONS_00006892 lncRNA upstream 431780 29566746 ~ 29567634 (+) False XLOC_003523
TCONS_00008406 lncRNA upstream 791221 29207886 ~ 29208193 (+) True XLOC_003520
TCONS_00008633 lncRNA downstream 13850 30091155 ~ 30103837 (+) False XLOC_003534
TCONS_00006917 lncRNA downstream 172746 30250051 ~ 30251936 (+) True XLOC_003536
TCONS_00006918 lncRNA downstream 175635 30252940 ~ 30253555 (+) False XLOC_003537
TCONS_00006919 lncRNA downstream 175652 30252957 ~ 30253557 (+) True XLOC_003537
TCONS_00006926 lncRNA downstream 221398 30298703 ~ 30300054 (+) True XLOC_003541
TCONS_00006902 mRNA upstream 17656 29975830 ~ 29981758 (+) False XLOC_003532
TCONS_00006901 mRNA upstream 27260 29965822 ~ 29972154 (+) True XLOC_003531
TCONS_00006900 mRNA upstream 122324 29856032 ~ 29877090 (+) True XLOC_003529
TCONS_00006899 mRNA upstream 205106 29790626 ~ 29794308 (+) True XLOC_003528
TCONS_00006898 mRNA upstream 209192 29770966 ~ 29790222 (+) True XLOC_003527
TCONS_00006910 mRNA downstream 13850 30091155 ~ 30103960 (+) True XLOC_003534
TCONS_00006911 mRNA downstream 83863 30161168 ~ 30231526 (+) False XLOC_003535
TCONS_00006912 mRNA downstream 84394 30161699 ~ 30231464 (+) False XLOC_003535
TCONS_00006913 mRNA downstream 85102 30162407 ~ 30231624 (+) False XLOC_003535
TCONS_00006914 mRNA downstream 85102 30162407 ~ 30232133 (+) True XLOC_003535
TCONS_00006893 other upstream 427886 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006890 other upstream 647193 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006865 other upstream 2478841 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 3384827 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 3921353 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006949 other downstream 894729 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 897466 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 938214 31015519 ~ 31024572 (+) True XLOC_003549
TCONS_00006967 other downstream 1547866 31625171 ~ 31671413 (+) False XLOC_003561
TCONS_00006968 other downstream 1569639 31646944 ~ 31668072 (+) True XLOC_003561

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_05680240_05680527.mRNA True 1290 mRNA 0.45 1 CI01000306 5679746 ~ 5681035 (+)