RNA id: TCONS_00070558


Basic Information

Item Value
RNA id TCONS_00070558
length 3795
RNA type mRNA
GC content 0.53
exon number 20
gene id XLOC_036037
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51050554 ~ 51147594 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATTCGGAGGACGAACCCTTGTTGATGCAAGGTACATGGAATTTGAGTGAGTTtgaagaggaggatgaaggagAGGCAGAGCAAACAAATGGAGACGAGCAGGTCTGTAAAGGGTTGTGGTGGACTTTGGGATGGGTCTACACGCAGCCCTGGGCGAGTGGGATAGTTCTGGCTGTGGGATTTCTGGTGCCCTTTGCTCTCTCGGCTTACATGTTCCTTCGCTGTGAGCCACTAGACATTGACCTTTCCTACAGTGCATTCGAGGTCAGGAGTCATGCCTCGGCGGAGCGTTTCGATGCTCTCACTATTGCCCTCAAAAGCCAGTTGGGATCTTGGGACAGGCACAGGCGGGACGCCGAGGGATTTGACCTGGAAGCCAATGACGTCTCTGGCATAGCGAATGTCACGGAACCTACAGGGATTTTGGGAAAAGCTGAGGCGGGAGCATACAATGACAACAGGCAGTTTGGAAATGAGAAAAACAAGGAGATGAAAGAGAGGGAAAAAGACTCGAGCATATCCGCAACCCTCAATTCCAGTGATGCCGAAGATCACAAGAAACCAGACTCGCCCTTAATGAGAACCCGTAGGTTTGCGGGCTACCCCTATCTCCAGACCCAAGCCCTTTGGAGGATCGAGCTAGTGTTTGTGGCCCAGGGTGACAAGGATAACAACATCTTCACCCCCGACCGTCTTCACACCATACACCATGTGGAGAGAGTACTAATGCAGCACCCTCAGTTTCAGCAGTTCTGCTGGAAGCCATTGGAGGCGTTGCAGGATTTGCCTCTGGGACCCTCCTTCTGCTCCCCTCCGAGCTCCGTCCTGTCCTACCTCTTTCCCAGTGAGCGAGCAGGGAAGATCTACTATGATGGAATGGGGCCTGATCTTGCTGATATACATGGTGCCCTGAGCTTGGCGATCACCCATCCGCAGTTTTACTGGTACGTGGATGAGTCTCTCACACCAGACAAGCTTCAGTCATCTCTTCTTCGCAGCGAGATCCATTTTGGAGCTCCTCTCCCCTCCTTTTACTCTCTTCAAGACAGACCATTAGAACAGAGACGGCTCTTCAGAGACTTTGTGGTGCAGTATGCAGGCATCCTCGCACAGCAATCCACCAGTAAAGTGAAGGTGTTGTATGGTGGAACAGAGTTATTCGACGATGAGGTGCGCAAGACCTTCAACAGTGACATGTTGCTGGCGTTGTTCAGTGGTGGATGCATCACTGTCCTTGTGTATGTTCTGACTTCTTTTTCTGTGTTTCTGACGTTCTTCGGCTTGGCCAGCATTGGTCTTAGTTGCCTCGTGGCTCTCTTCTTGTATCACGTGGTGTTTGGAGTGAAATATCTCGGCATTCTCAACGGAGTGGCAGCTTTCGTCATCATCGGCATCGGTGTGGATGATGTGTTTGTGTTCATAAGTACATTCAGACAGTCGGTTCATCTGACCTGCCCGATGCAGCGCATGATTTCCACCATGAAGACGGCCGGCAGAGCCACTTTCCTCACGTCCTTCACCACCGCCGCCGCGTACGCTGCAAACACCTTCTCACAGATCCCGGCGGTTCATGACTTCGGTCTGTTCATGTCTCTGATCGTGAGCTGCTGCTGGCTCTGGGTGTCCGTCCTCATGCCTGCTGCCCTCTGCATCTGGAGCTCGTGTGGAGCTGCCCGCGCCAACTCCTGCCCCAGATGGTACAGCTTTTTATTTCAGCATCCTTTGAGAAGCATTCTGAATCTGTGTGCAGGTGTGTATGACTCTGAACCGGACGCAGCCCTTCTGTCTCTCTCTACAGAAGCTCCTCTGTCCGCGTCCACTGAAGGCAATGTCGGAGTGGTCAGCGCTCATATCCAGAGGCTCCTGAGATGCTGGGTGGCGGAGCCCGTAGTGGAGAAACGCAAAACTATCATAGGTGTGTATGCGGTGGTTCTGCTGGGCTCGGTGTGGTGCTGCTGTCTCCTGCGTCCGGCCAGTCACGCTCCTGTGCTGTTCCACAGAGACACAAACCTGCAGAGACTTCTAGACATGCGCAGTAACCTGAGCGCTCAGGGGATCTCCTGCCATATGTGCTCAGGTCAGCCTCACTCTTCTCCCGGGtttgtaaaaaaaagtcttggttttgcttggttaataaataatcaaactcattcaatgATGGGCTCCGCCGTTCCTCTTTATCGGTATTCACTAAGTGCCAGTGTACCTGCACCCTGGCAGGCTTCATCGGCTGCACACGGAGACGTGCCATCCTTTCAGGTCTGTGCCTACAGCAGTCCCCATAGCAACTTCAGCACGCGGATAAGCGTGTGTGTGTCTCACGCCTATCACCCGCGGCCCCGCTGGATGCTGACGCTGCGCTCGTGTGACGGCAGCCGACGCTGGATTGCAGAGTTCGAGTTTTACGTGGCTTCGGTGGAGCAGCAGCGCAGCAgGAAGCTGTATTTTGCGCAGCACACGATCAGTCCGTATCCCAGTCGTGTGTGTGAAGGGCCACCGGGTTGTGTGTTCAGCTCTGGACCTGATGGACCCACTCAGGGCAGTTTCTACGCACCGCTACCTGTGAAGATCTCCAGGACATCAGGCTTTAACCCCTGCAGTGGAGGTAAATGTGGGAAGCCAGCcgtgcgccctctagtggataccGGAGCCATGGTGTTTGTGGTGTTCGGCATACTGGGGGTGAACCGCACTCAACGCTTAGACAACCATGTTATTGGAGACCTGGGCAATGTGATCTATGACCAAGACTTTGATGTTTTTAATGAGATCGGCCACTTGTGCAAGCTGTGCAAAGTCATCAGTGCCAACACCAACCTGGTGAAGCCTGGAGGAGCTCAGTGTTTGCCATCAGGTAACAGCCTCACATCCATTCTGCCCTTACTTCATCCCGAGTGTCACTCTCTCCCTGAGCCCAATCTCTTGCCTGGACAGCTGTCCCATGGTGCAGTGGGCCTGCAGGGCGGCAGGGTACACTGGATCTCTATGGCATTTGAATCCACCACCTACAAAGGAAAGTCTTCATTTCAAACTCACGCTGACTTCCTCCAATGGGAGAGTTTCCTGCAGAAGCAGCTCGCATCACTTCCTGCCTCGTCCGCCTTGAGAAGAGGCTTCCAGACCTGCCAGCACTGGAAACAGATCTTCATGGAAATTATAGGTGTGGAGAGCGCCCTCTACAGTCTTCTGCTGTCTCTGGCCATCTGCATCGCTTCAGTCGCTGTGTTTACTGCTCATCCACTTCTGCTACTGCCAATCCTGCTCAGCATTCTGGgtatgGTGTGTCTGGTGGTGGCAGTGATGTATTGGCTCGGGTGGGAGATGGGAGCAGTCGAAGCCATCTCTCTCTCCATATTGGTGGGCTCTTCAGTGGACTACTGCCTGCATCTGGTGGAGGGCTATTTACTGGCGGGTGACACCGAAACCTCAGGACTGGTGAATCAGTTTGATCCCTCCATTAAACGGCAGATTCGGACCCTGGAAGCAGCCAATCACGTTGGAGTCGCCATCGTTTCCAGTGCCGTCACCACGGTGATTTCAACCATTCCTCTGTTTTTTTGTGTCATCGTGCCTTTCGCTAAATTCGGTCAAATCGTGGCTATCAACACGGCCATTTCCATCGCGTTCACGCTAACAGTCACCACCGCACTACTGGCAGCGATGGGACCCAGCGACTTCACACGACATCCCAGAGCTGTACTCAAAGCTGCAGCGGTGGTCTTGATCATGGGGGTCTCTGGAGGTCTGCTGTGGTGGACTGGATCACAATTTGCTCCCGAAATGCTGGACTAA

Function

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

Ensembl:

ensembl_id ENSDART00000127709

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070553 lncRNA upstream 98518 50979018 ~ 50986475 (+) False XLOC_036036
TCONS_00072291 lncRNA upstream 552805 50531703 ~ 50532188 (+) False XLOC_036030
TCONS_00072290 lncRNA upstream 570960 50508918 ~ 50514033 (+) True XLOC_036029
TCONS_00072289 lncRNA upstream 811515 50256786 ~ 50273478 (+) True XLOC_036027
TCONS_00072288 lncRNA upstream 1043178 50038691 ~ 50041815 (+) True XLOC_036024
TCONS_00072292 lncRNA downstream 13012 51160606 ~ 51165849 (+) True XLOC_036038
TCONS_00072294 lncRNA downstream 434135 51581729 ~ 51586703 (+) False XLOC_036039
TCONS_00072293 lncRNA downstream 434135 51581729 ~ 51586703 (+) True XLOC_036039
TCONS_00072295 lncRNA downstream 578052 51725646 ~ 51726902 (+) True XLOC_036040
TCONS_00072297 lncRNA downstream 627828 51775422 ~ 51778591 (+) False XLOC_036041
TCONS_00070554 mRNA upstream 57452 50983551 ~ 51027541 (+) False XLOC_036036
TCONS_00070555 mRNA upstream 57952 50985798 ~ 51027041 (+) True XLOC_036036
TCONS_00070551 mRNA upstream 122104 50953776 ~ 50962889 (+) True XLOC_036034
TCONS_00070550 mRNA upstream 134444 50946379 ~ 50950549 (+) True XLOC_036033
TCONS_00070549 mRNA upstream 134447 50942240 ~ 50950546 (+) False XLOC_036033
TCONS_00070559 mRNA downstream 560187 51707781 ~ 51726631 (+) False XLOC_036040
TCONS_00070561 mRNA downstream 811374 51958968 ~ 51986997 (+) False XLOC_036042
TCONS_00070560 mRNA downstream 811374 51958968 ~ 51986997 (+) True XLOC_036042
TCONS_00070563 mRNA downstream 1136481 52284075 ~ 52297799 (+) True XLOC_036044
TCONS_00070564 mRNA downstream 1166948 52314542 ~ 52350684 (+) False XLOC_036045
TCONS_00070552 other upstream 116994 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 1266122 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 1704690 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 1979942 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 2352135 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070562 other downstream 1014267 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 1383343 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 1875945 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 1876085 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 2098048 53245642 ~ 53255762 (+) True XLOC_036071

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_04406761_04429903.mRNA True 1659 mRNA 0.52 12 CI01000050 4406761 ~ 4429903 (+)