RNA id: TCONS_00072292


Basic Information

Item Value
RNA id TCONS_00072292
length 4555
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_036038
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51160606 ~ 51165849 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acaatataaataaattgcatcTTTTTTTGCCTGCAGTTACACATTAGCTCTTGTCAAGTTGTCTATGGTTTAGATgaatacatatttacatacatacatatgataAAATGCATAAACATGTATACCAAAGTCTTGTGTGGGAAGGCCGGTCAGGGTGAATAGATCAAGCATCCACTATTATGCTGAGGTAACTTCTcttctgtgttgttgttttgccCACAAAACACCATTTTTCAAACAGGAAGAAACAAGCAAGGCATTAAAATCATCAATGGGATGCGATTCGATTAGcgaaatgtacaaataaatgttCAGATATACTAAACTGAATATAGgcggacacacaaacacacaaagaatTGATGCGAAGAACTAGGATATACAAGTTAGCGCAAACTGCTGGCCGTACATTGAGCAAGTCGTTTGGTCACAGCACTCGAGGCTTGAGGTCAACCGATTGAAAGACGGAAGAAGGCATCACAGCAAATCAAACCCCGACCAAGTCAAAACAGCATCCCAAATCTTCAAATCTGCCGTCTTAAAAGGATTCGCTGGGGAGTACATGACAATCAGATATGCTGAACCTGAGATTTGTAAGAGCTTTTAGGTAAACCCACGAAGGCAAACGGGTGTGAAATGATATCAACCAATGAAACGCAGGAGGACTAAAAAGTCTAGAAGAGATGCCAACTTCATGAAGATGATCCTGGAAACACTTCAGATCTAATAATCGGCCCTGGAGAGCTCAAAACTCGGTACTATCCCACATCTAACACTGTTTTTCTCCCTGCTAAAACTGGACTTCAATGGAGACAGAGCAGTTCCTCTGGGCGCAGTTGAAATAGCACCATCCCACCACTCTACCACATGCTGAGGTACAGTACTGGCGCTTTTTTCCCCTCGCCAACTGTGTTAAAACAACATCTATCTAGCAATGGGGCTTCTGGAGactggttaaaaaatacaatCCCTTCTAGAGTTAACTCTATATCATAGCAGGTGGTGTAAAAATGGACCTCAGTCAGAGTTGGCGCCATATTTAATGCGATAAGTTGACGGCTTCGCTTATCGAAAAGTTGTGTACTCACCATGGTATCATTCCATCCATTCTTACTTCGATGTAAAACGAAAGGTTGGTGTTTGGACATACTATGAATCGACAGGGACCAAAGTGATGTTTTTGACCAAAGCAAATTCCATTATATGAACGGAACTATTCGCAATTGCGAATGACATGAGGTTAGCAAAAGTACTTAATTGTTTACCTCATAATCCTAAAGAGTAATTCTGATGGGAAGCTTACATTTTTTGTCGCATAAATGATTGATGCTTTTTGATTATAACGTTTATACGGGTTTTTCAGCGATATCgtacagcaattcgtaactttttgatttagtggctaattcgtttttattcgtacaatctcattcaaaCAATTTTAGTATGTTTTGCTTATGCCcgaatgatggttgggttttggggcggggttgggtgccacacctccttttaaaattcgtacatttttgtatgtctgaactcgtacgaattcatacgaattagccaataaactgaacaaacataaaataggtacctcgtgagatcaggctgggttttTTGGtaactttacttgaagggggtgttgataagactgtcatgaaccctttataatcatgacatgacacacaGCATGAATATGAACGAGAAGCCGTTGTATCATTCACTCGGTTATGTCATTTGAAATGCAATATGACattgtttgagatgtcttcaTGTTAAAATgcatgtcataaatctgtcataaacatgactgtcatgaaACCATTATGATTGCTATTATAATGCCgagttcacaccagacatggcaCGCGCAAATAGATCACGCTATTAGCACATAAATAGACgcttgaacattttgagtttactcgcttcattcatgcGTCAAATTCTCTTCACAATAGACGCGGGGCTTCTGTTTGCTTGATGACTCTAGCTTcaatgctaaatggctaacatggattttactgAGATAGTAGaggctttatgtgctttaggaaggctgaaaaacatcaTAGATTCGTTCGccgtctgagtccactagatcctgatttcagaggtgcacccagctctgagtTCATCCACTCCTCCATAAACAGGACCTGCATGATGCTTCACACTGAGCTGTTGTCCAGTATCGGCAGAAGGATTTTCCCCTCGGGataccaacaacaggcgctacatcataatcacttCCCTACAAGAGCAAGCCCGTGATTGGGTAATGCGGCGTGAACGTCTGTTAAAGTTACGCTTTTTTTGACTTTCAAGATTTTCAACAACTTTTTCAAAACGCAAATCTCATTTGCACGAATCGCGTCATTCATGCGTCATTCGCATCATGCACCATAGAAAGTCTATTCGTGTATTTGCAATGACCTAACATGTGAATCCCTCGCGCTTGACGCTTcatctgtgtctggtgtgaacgcagcattaagcTATTAATGTtttcttgacctcaactacagtgttaataatttaatgtcattaaaatgtcattattgtTAATGGCACATATGTTTGGTCAAAGTGTTGACACGTTtaataagacattttaatgaTGTCCATTCAGttccactggaaaaaaaaagtgatcagaaaaatagTCATGACACACTTATAATCGCTTCATGAcgattatgtttatgacagatttatgacaggtcTTGGttaaagttgtcatgacaaagacatctAAAATGACAAAACTAAGCGAATGAGACAGTTgttataaaaatgcttaaaatctCAATCATATTCATCATGTCATGGCACCCCCTTCAAGTGATAATTATTTTTACTGCCACTATAGGGCCTATAGTTCAGTAAATAAACTCTATTCGAATAAATTCTAATATAAAAAGTGTTACTAAATCtggtagttcacctaaaaaaaaaatcacgtctTTCTTTCCTTCATTCCCTCTCTGAAAAATACTTCCAGAGATTTGTTTTGCCCACACAATGAAAGTCACCAGGGTCGATCATTATGTCGTTTCGGACCCCTCTTGACTTTGACTACAAGGGCAACATAGCTTCTTTTGTGATTTGCGAAGATAAGTAAGTCATGCAGGTCTGGAATGACACGAGGGGGAGGTAAACCATGACTGAATCTTCATTTCATGGTCAAAGCAACTctttgtgtggtttattcataaactaatttcgagaggatcacgtgcttataatcaacacggctggctccttgttagctccgtaatcagccctattagatgattagggaagcattataaatagcctgagtttttcactccagttatcttcgtcttgaagctccacCCCTTTCTacccctacatcctccccctttttctgatcgggcgacacggtggtccagtggctagcactgttgcctcacagcaagaacaccgccggtccaaccCCATCGGGCGgtctggtgtttctgtgtggagtttacatgttctccccgtgttcgcatgggttttccccgggttccccggtttcctcccaccgtccaaaaacataaaccacagccaatcgactaaaacaaattatcacccaatacaaccttagtTTAAACTTCTCACgttgacaagcaggggagttctcaagacctacctgacctcgaattcccctctcgcccttctaacgggagggagccccgggctcgaggatattacgagctcagggctctctcccgggacagcatgccaaatacgatttattgattatcagctaagtgtgaactcttgaataggtCTACAGGTAATTCTACTTTTTTAGGAGTCTACCCTGACTGAGGCCCGGTTTCATACtgttttgcaaaacaactagAAATTGTGCGATAAAAGATGCTAAAAAAAAGCTGGGATTAAAAGAAAACAGCATTGGGAATTCAGGACAAAAGAACGCCTATCCTGCCTGATTTGTGACGAGGAAGGCAGCACATAATCAGGACCTTAAAAAAAGAAGTATAGACAACATatcattctgtttttgtttttttttaaagcagaagcaATTAACATCCATCAGACATGGGCCACACTTTGTTTATAAGTCTTTTAATATGATAACTGTTTCTGGAAAACCTCCTAGAGATTGATCATTTCGTTGGGGGGGGGCAGGGAACCTTCTGGACTACTGGCCAGGGAAATAGCGGGTTATCATTACAAATGCTGGTGCCACCATCACGTCCACATTTCCTTCAAGCTGTACCACATGCATCTCTTTGACATACAGTGTCATTTGCTCAAGTGACGACACAGGAACTGGCCCACGGTGGCCATCATGAACAAGGCAATGAAGAGTCAAGAAGAGACGGTTGTTTCCCCACAGCGCTGCAGTGAATCTCTCCATTCAACGTTGGAAACTTGCGTCCCGAATGCCCCTTTCTCCCTTCCTACTATTTGAGTTTGGTTGACCGGTTGGTTCTCCTGCGGGAGTTCCTTCGTGTATGCACTCTCGGCTCATGAAAAGGCGACAAGTGGGATTCTAGTAACCAGATCAGCTATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070553 lncRNA upstream 174131 50979018 ~ 50986475 (+) False XLOC_036036
TCONS_00072291 lncRNA upstream 628418 50531703 ~ 50532188 (+) False XLOC_036030
TCONS_00072290 lncRNA upstream 646573 50508918 ~ 50514033 (+) True XLOC_036029
TCONS_00072289 lncRNA upstream 887128 50256786 ~ 50273478 (+) True XLOC_036027
TCONS_00072288 lncRNA upstream 1118791 50038691 ~ 50041815 (+) True XLOC_036024
TCONS_00072294 lncRNA downstream 415880 51581729 ~ 51586703 (+) False XLOC_036039
TCONS_00072293 lncRNA downstream 415880 51581729 ~ 51586703 (+) True XLOC_036039
TCONS_00072295 lncRNA downstream 559797 51725646 ~ 51726902 (+) True XLOC_036040
TCONS_00072297 lncRNA downstream 609573 51775422 ~ 51778591 (+) False XLOC_036041
TCONS_00072296 lncRNA downstream 609573 51775422 ~ 51778591 (+) False XLOC_036041
TCONS_00070558 mRNA upstream 13012 51084993 ~ 51147594 (+) False XLOC_036037
TCONS_00070557 mRNA upstream 13012 51084993 ~ 51147594 (+) True XLOC_036037
TCONS_00070556 mRNA upstream 33766 51050554 ~ 51126840 (+) False XLOC_036037
TCONS_00070554 mRNA upstream 133065 50983551 ~ 51027541 (+) False XLOC_036036
TCONS_00070555 mRNA upstream 133565 50985798 ~ 51027041 (+) True XLOC_036036
TCONS_00070559 mRNA downstream 541932 51707781 ~ 51726631 (+) False XLOC_036040
TCONS_00070561 mRNA downstream 793119 51958968 ~ 51986997 (+) False XLOC_036042
TCONS_00070560 mRNA downstream 793119 51958968 ~ 51986997 (+) True XLOC_036042
TCONS_00070563 mRNA downstream 1118226 52284075 ~ 52297799 (+) True XLOC_036044
TCONS_00070564 mRNA downstream 1148693 52314542 ~ 52350684 (+) False XLOC_036045
TCONS_00070552 other upstream 192607 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 1341735 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 1780303 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 2055555 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 2427748 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070562 other downstream 996012 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 1365088 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 1857690 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 1857830 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 2079793 53245642 ~ 53255762 (+) True XLOC_036071

Expression Profile

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