RNA id: TCONS_00072293


Basic Information

Item Value
RNA id TCONS_00072293
length 4651
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id XLOC_036039
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51581729 ~ 51586703 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatacatacacacacacatacacagagtataaaaaaaaacagacaacaaCCTTGATTCTAACAGTCTATTTATGGAAACACATCCGTAATAGAGTGCAACAGAGTTTGGCGAAGAGAGAACGAGTAGATCGTCCCTCCACCATTTACATAAATACAGCctgatacataaataaatagctCGCGCCCCTTAAACAAGGGTCCGATATACATAGAGAATCACACTTAAAGTGCAAAAGTCTATTTTGATTGCCTTCATTGAACAGGATTGACAGAGTACCTACAATAACATATGTAAATGAAAGAACACAACAACAGCATATCGTATaataacaaacaaacgaacaaaacaaACTCGAGATGGCTTTCATTTTCTTTAAACCACGCAGCAAATAATCCAGGTCAGCTGATATATTAATGCAATATCGGAGCAGCACTAAAACCTAAGCTGTATTTTATCTGCTACTTTCTTTGAGATTTATCATCACAAAACTTAAGGATGTAAATGCACACTGTCAAAATTGATtagtttactttacttttaaaaattgtgAGTGAACATGTTGCCCTAAAATGATTAAGTATCATAaaatttaagttgagtcaacttaaaggggacctattaagcctctttttacaagatctaaaataagtctcCAATGTTCCTATAGTGTAAGTATTGCcaactattttaaattaaaaggtGCTAAGCTCTGCCCGAAAAGTGATTAAATATCACAAGATTATGTCATACatcaatttacgaattggatttgcacatttatgaattgtattttttaatttctgaattggatttgtgtatttatgaattgcgtttttaatttatgaattttttttgcgTATTTctgaattatgttttatttaacgaattggatttgcgtatttataaATTGCGGCTTGAATTTACAAATAAGTTTTGTCCATTAACGAATTGCATCTTCAATTTATGAATTGGCTTTGCGCATTTAAAAACTGcgtcttgaatttacaaattagatttgtgcatttataaattgagtcttgaatttacgaattagatttgcgcATTTCCGAATTGTGTCTTCAattgacgaattggatttgcgcatttataaattgtgtcttgaatttacgaattggatttgcgcatttgcGAATTGTGTCTTCAActgacgaattggatttgcgcatttatgaattgtgttgttgAATTTACGAAtaaaattttgtaaatgtgaattgtgaatgtattattttttagactGATCTTGTTCCATAGAAAAGCCGACGGCATCATCCACAGCTCGGTACAACGGTACAGTGTGGACCATATGAGTGTCTATAAAAATCTTCagtaacaccaaaaaaaaaaaaaaaagtcacaagaTTTGTTGCTAGTcaattttttgaaaatgtgtcaATAAGAGGGTCAGACAAAGTCACAAAGTTGGCAACACTGTATAGTGTATGTGAAATTTCAGCTCATTATACCCCACAGATCATGTTttgtaactctttgaaactgccccttttaggctttgatactAATagtggcattttggtgactgtcgctttaaattcaaatgagattgtgctcttttcaaaagagggctgagctacaaatgcctgtgtcagcatagtggcagattcaaaaacaagactaatgctctgctaataagggagagatggtcactaatgcgtgggggctttccccctctgatgacacgtacaataAGGGAGAATGCCAGTTAAAGTGTGTCTGCAGATTGTTTTTCTCaagtgtaattataaaaaataaaatttatatttttttaccattagaagctggctatattcacactcTTACCACAGAACTGTGTTTAAACttcatataaaagtgatttttgcataataggtccactttaaaTGCTCTAAAATACAACAGGTTTGTTCAATTTTTCTAAGTAAAGTCTACTTGTcgctattttaaaataaagtaaataattgcGTTTTACAGTGCACAAAGTGATGCTCTAATTTAGTGcttcaacaaaaaacaaaccagaCAGGATTGATAAACAAACATACCATAAATATCAGGAAGAACTAGATTTGACATTATGACACAAGAATCATCACATGAAAATATTTGGTGTGGGTTGGTCATTTCAGCAATTCACctccacaataaaacaaataatagggAAAATCAGAAATCTGAAGTGTCATATTTACATGTATAATATAGTGATGATATAAACCAGCATACTGGCACCACTGGTTAATCAATGTGCATATTAACCTATGGCTATAAGTGTTATTACATAGAATTAGAACAGAACGCAGCAAAATGTGTTTTGAAGTCAAAATAACCTAAACATGATTATGTTGAATGGGAGGTAGATCAAACAACACATGGAAAACTggaaagcaaaacatttttagacatacaaaatatgaaaacgGAATATCTGAGACTTATACAGTTAAAAGCAAAGATATGAGCCCTCctgttttcataattttttaatatttcccaagtgatgtttaacagagcaattcaaattgtcacagtattttatataatattatatcttcagcagaaattcctatttcttttagtttgcctgaaataatagttttaatataaaaaaaaatattttaaaaatcttattagccccttaaaattattgtatatattttttgattgtctaaatgttactttaagcagAATAATAGTatctttataataattttattattaataattttataaataatttttatttataataaatttattattattagaaattagttatcaaaactatcctgtttcaaaatatgttttctctgttaacagcacttggaaaatataaaaaaaatatataaaaaaaaatttaacacacACAGGGCAAATAATTTAGCCTTCAACTGTGTATTAAATGTACATTGCATATCTGAAACTAGAACCGTCAGTTTCACGAGATGTTTAAGATATTTTCCATTATTACTTAAAGCTACTATGAGTTTACTTTGCCTGGAGTAAGCTGTGCAACATTAAGCCTTATCAAAACTTGCCTAAAATTCATCGTCAGCTCTAAAATTCTACAGATATATTTGGTTGCATTGattgacagaaatgttgacttCATTTTTTAAGACAAAACACAACCTGAAATGTGTACATTCGGTAAAAGTGAACAATTGTTCAactcaaagcataaataaaagagttttttttttttacatatttggaattTCTACATCAAGCTTTCGCTGTTTTGGCCACAATTACAGACCCTGGATGTGCACTAGTGCATGAGAGCACTGCAAAAATTGCTTTACTTACTTAAGGTTTttctcttgtttctagttcaaatatctaaacattcttaaattaagatgcattttctagacaagtttttgttttcagaaattattTGTGATGGGAATAAtggttttataaataaacaatgttactAACGGAATTGCTTCTTTCAGTAACGagtaatcaaataaattacaGTTTCCGTTGTTACAACGCTATTACCATCACTAACCATTATATGCTGTGTTATATAATTGATATTTCATTTACAATTGGGCTCACTGACAAGGTTTTCATCCACAGAGGTTGGACAACCACATAACTCATGATGATTGGGGATTGTGCCTAgtggtgggacaaccacataactgatgatgattggtgaGTGTGTGTAagggtgggacaaccacataactgataaTGATTGTAGAGTGTGTGTTTAAGGCTAGGACAACCATATAACCGATGATGATTGgtgagtgtgtgtaagagtgggacaaccacataactgatgatgattggggAGTGTGTGTAGAGacgggacaaccacataactgatgaataTTAGGGTGTGTGTGTAGGGGCGGGATAACCAGATAACTGGTGATGATCGGGGACTgcgtgtaggggtgggacaaccacataactgataaTGATTGGAGATTGTGTGTTgggtaataatattataataaaatagaatagaatggtgtacaatgttttatttataataatttatttattttagtgtccaatttattaaacatacagcggtcactttttggacatttttaaaaattaacgcAATAGTTACTTTCGCTGGTAATTAGTTAGTTTTATAATGATGTAATCCAGTTACTAACtttttttacttactttttatgagaagtaactagtaactataacaaatgttttaccttaaatcaagcaaaataaactGCCAATGGCATAAGCAAAACAATTTTGGTTTCAGTTTGAAATAAGAACATTTTATTTACCCTAATGGAAGATTATTTAGCtagttttaacaaaaaaaaactcagataATTCTGACTTACtgattctgaaaacaaaacaatattttgaatttgtgtAGAAAGTGCTTCTTGACTgaagaatttttagatatctgGCCCGAAAACTGGACAAAAATCCTAAGCAAGTagaatttcttttagttttttttttttgcagtgagtaAAGCTCAAAGAGGGCTGGCAAAACAAGTGCTAGTATTGCATAAGTTTTCACAGGAGCGTGAAAAGGATTGTGGGT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0022612 gland morphogenesis biological_process
GO:0035270 endocrine system development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007418 ventral midline development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0021508 floor plate formation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072292 lncRNA upstream 415880 51160606 ~ 51165849 (+) True XLOC_036038
TCONS_00070553 lncRNA upstream 595254 50979018 ~ 50986475 (+) False XLOC_036036
TCONS_00072291 lncRNA upstream 1049541 50531703 ~ 50532188 (+) False XLOC_036030
TCONS_00072290 lncRNA upstream 1067696 50508918 ~ 50514033 (+) True XLOC_036029
TCONS_00072289 lncRNA upstream 1308251 50256786 ~ 50273478 (+) True XLOC_036027
TCONS_00072295 lncRNA downstream 138943 51725646 ~ 51726902 (+) True XLOC_036040
TCONS_00072297 lncRNA downstream 188719 51775422 ~ 51778591 (+) False XLOC_036041
TCONS_00072296 lncRNA downstream 188719 51775422 ~ 51778591 (+) False XLOC_036041
TCONS_00072298 lncRNA downstream 188721 51775424 ~ 51778591 (+) False XLOC_036041
TCONS_00072299 lncRNA downstream 188728 51775431 ~ 51778591 (+) False XLOC_036041
TCONS_00070558 mRNA upstream 434135 51084993 ~ 51147594 (+) False XLOC_036037
TCONS_00070557 mRNA upstream 434135 51084993 ~ 51147594 (+) True XLOC_036037
TCONS_00070556 mRNA upstream 454889 51050554 ~ 51126840 (+) False XLOC_036037
TCONS_00070554 mRNA upstream 554188 50983551 ~ 51027541 (+) False XLOC_036036
TCONS_00070559 mRNA downstream 121078 51707781 ~ 51726631 (+) False XLOC_036040
TCONS_00070561 mRNA downstream 372265 51958968 ~ 51986997 (+) False XLOC_036042
TCONS_00070560 mRNA downstream 372265 51958968 ~ 51986997 (+) True XLOC_036042
TCONS_00070563 mRNA downstream 697372 52284075 ~ 52297799 (+) True XLOC_036044
TCONS_00070564 mRNA downstream 727839 52314542 ~ 52350684 (+) False XLOC_036045
TCONS_00070552 other upstream 613730 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 1762858 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 2201426 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 2476678 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 2848871 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070562 other downstream 575158 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 944234 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 1436836 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 1436976 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 1658939 53245642 ~ 53255762 (+) True XLOC_036071

Expression Profile

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