RNA id: TCONS_00070559


Basic Information

Item Value
RNA id TCONS_00070559
length 7145
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_036040
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51707781 ~ 51726902 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGGAGAAACTCAACTGGCGTTCAAAAATCAAAACATCCCGAAACGTCCTCGTCGTTTTCATATTAATATTCATCATTATCATCGAGTGACTGCAGTCATTAAACAGCTTGTTTTCGCCGTCAGACCTTTTCTGCATTGGTGTGGAATTACGCACAAAAATGTGAGCAGGTTCACTTTCTGTTTGCATTATTGTGTCAAGATGGCTGATGATTTGGTCTCCTGCACGGCTGGAGGGGCCGTTCGCTCCGCTCAGCCTTGTGCCAAGCAGAAATATCGCAGCACCGCCCACTCACAGGGGCTGTTAGATGGGCTGCTTATGCTGCGACAAGGTGGTATTCTGTTTGACGTGGTGCTCTTGGTGGAAGGAAAACCCATCCAGGCTCACCGAATTCTCCTGGCGGCGTCGTGTGACTATTTCAGGGGCATGTTTGCAGGTGGTTTGCGGGAGATGCAGCAGACTGAGATCCCTGTTCATGGGGTTTCATACACGGCCATGATGAAGCTGCTGGACTTCATCTACACCTCGGAGCTGGAGCTGGACTTGGACACGGTGCAGGAGGTGCTGTGTGCCGCCACGCTGCTGCAGGTCCAAGATGTGATCGGCTTCTGCTGCGACTTCTTGTTCTCCTGGCTGGACGATGACAACATCCTGGAGGTGGAGAAGCTGGCCGACATCTACGGGCTCCACCAGCTGGGGGAAAAGATTCGCTCATATCTGCTGAAGAACATCCAGACGTTTTCACGCACGCCGGTGTATCGGAAACTACCTGCAGAAAAGGTGTTGAGTGTGCTTTGTAGTAACGAGCTGGAAGTGGACTCGGAGAACGAGGTGTACGAAGCCGCACTTCACTACCATTACACTCCCGAACAGGTGGAGAAAGACCAGGTTTGCTTACAGGAACCGCTGCGGATGTTGGAGGCGGTGCGGTTCTGTCTGATGGAGAAGCACGTTTTGCAGCGTTTGCACAGTCGGTTAAAGCAGTGCCCGCTGCGGGACTCGGTGGCTGCCGCTCTGCGTTACCACAGTCAGGAGCTTTGGCAGCCGGTGATGCAAACCCCGCTCACTCTGCCCCGCTGCAGCTcccagtgcattgtgggatttgGTGGCATGTATGCATCGAGTGCGCTGGTGGACAATGAAGAGCGCTTTCAGGTCTTCCACCCATCCTGGAGCGAGTGGCGGAGCCTGGCGGCAGAGCGCGCTCCGCGCATGTCCAACATGGGCATCGCTGTGCTCAATAACTTTGTGTATTTAATCGGCGGGGACAAAAACACCAGCGGCTTCCGGGCTGAAGCTCGATGCTGGAGGTACGATCCTCGCCAAAACAGCTGGTGTACAGTGGAGTCTCTCCGGCAGCAGCACGCGGATCATTGCGTCTGTGTGGTCGATAAATACATCTACGCCATCGGAGGACGAGACTACACCAATGAGCTGGACTGTGTGGAGAGATACAACCCACAGACCAACACATGGGAGTTCATGGCGCCGCTCAAACGAGAGGTCTATGCTCATGCTGGCGCAGTGATTGATGGGAAGATCTACATATCGTGCGGCCGGCGGGGAATGGCGTATCTGAAGGAGACGTACTGTTATGATCCCGGCAGTAATCATTGGAGTGTGTGTGCTGAGGGTCCGGTGGAACGAGCCTGGCATGGCATGGCAGCCCTCAACGAGCGGGCTTACGTAATGGGAGGAAGCAACGATAGCTGCGGATACAGAAGAGACGTACTGAAGGTGGCGTGTTATAACCCAACAGCAGATGTGTGGTCAGTGGTCAGTCCACTGCCAGCAGGACATGGAGAGCCCGGTACTGCCGTCCTCGATGGTCGCATCTACATTCTGGGTGGACGGTCGCATGATAAAGGCAGTCGAATGAAGTACGTCCACATTTATCATGCGGACGAGGACCGATGGGAGAGCGGCACGGCTCTGGAGGACCGCGTATCCGGACTTTCAGCCTGTGTGCTGCTTTTGCCTCGAGCAGCAATGGCTCAGGCTCACAGTTGGGAGCAAAGAGCCAAAGCATCATGGGAAGAGGTGGACTGGGACGACTCGGACAACTCCAGCGAAGACTAATGGCATTAGCGCAGCTCAGGTAGGCCAGAAAAATCACAAAGTGAGGGAAAGACAGGCTTTATGACCTTGGAGAGTATTTAAAATTCCACTGATCTTGAATGGGTCACGTTTTGGGGGCGTTTtagtttgattattattattgaaaagcGGTAGCCGTGTTTCCATGCAAAGATGCGAATTACATTTGGAATAATGCATGAAAtatttgcgaataaagcagcgtttttatcaaATTAGTCAAAAAGGAGGAGGGCCGGAGCAGGGGGTAGCGCTGtagcctcactgcaagaaggtcgcaggttcgagcctctgATGGTGGTTGAGTTTGCAGCTGAATATTATTCAAGTCAAGTcatgttaaaatttatttataaagtgctttttaaaacaacaagtgcttaccaaagtgctgtacactagagatgcgcggatggcggttacagctgcggataaaccgcggatggggcggatgacgtgacgaaaaattaaattttaattatattcgggcgggtggtgggcggttgtactgtttttgtacacatagctggcgcaccaacgaaaaagcctaggactgacttcacagaatgagagaaggaatcggatacactaattctggatgaagtacagaagtattcctttacaaacttccgtatagacggatcagcagaggaaaatctactttccttttaggagaaacaaggcagtcattcccacgactacagctccttgccaagagaattctatgcattccagcaacaagtgctgcgagcgagcgctccttcagcgCAGCCGGGCGCATTGAGGCCATgcgctctcgtctgaatgttgaaatgatgtgtcaaaatgcgttttctattaggctacaataatagtaaaaaaattgtacagtacagtccatttaatttaggctatttatttatttttgtccctgtgcgccaattggagacggagttcactgctgatattctgagagctttataggggtgcttctcatttcttatttgtgtatcctcgtttcctttccttgctttctttcctcgtctttccacccctataggatgcgagggtaggacgcaaggaaaagactaaAGGACCGAGGAATTGAATCAAATGAAACGGcacgtcctcgtattgtttagcttcacttcaaagcgtcaattaatgcTGCATTGACTTGCACGTTTGAATTAACTacatgtcattaaagtcattgtctattttctaataatcaataaagaaacattcatttaataataaaaaggaataagccattcaaataaagagctcagtcagcagatggcgggcgggtgcggttttaaaatttggtcgaaaatgttagtgcggatggatggcggacggatgatgagttttgtgatgcggttgcggatgaaataatagcccatccgcgcatctctactgtacacacatacaccatcTAAAACAAAGGACTAATACAACAGACACATGACTCTCATATGGTATTAAAAGCCAAAGAGTAAAAGTGGGTTTTAagactagatttaaaaacagaaagggtTGCGGCCTGCCTAACATGGGGAGGCAAATTAGGCCCCGTTCACACAAGTGCGTTTTAGTTTCAAAAcaaaacgatctgcgtccacactagcgtttcacctagcgtttctgaacatatgtccgtccacactacgccaccaaaaacgtatatcacgtgaccattcgcacactctgggcatgagcgttctagtataaacaggaagcatgcgtctcgctcgacatttggttattgttagtcaacaaacgccggttgaacaatgaacgcgatggcaaagaaagcaagagaggtatttttgtggacagacgacgaggtcgagttgtactaaacgtaacaaatgaataactacacaatggcacctaaaacagacaatagtgcaaacaacgctcccatgtctgtgtccgtgttgttgtttacagtgaaggctggtctgctgtcttccagtagcgttaaagccatgtgttatagtcatgtgataggggcttgacgaataagggaaggatacgcaatggcacaaaagccccaatcaggtagcgaatctcagcagccccgcctccgtttacagatgtctccgttttctcccatccacactgagacagagcagcagcatttccgaatgaaaacggcctcttcagcgtttccaaaacgctccgttttctgcgctcgaaaactccggcgtaaccgtagcaaaacttatgcgttttcaaactaaaacgcattagtgtaaacggtgacgcagtggcgcagtgggtagtgcggtttgcctcacagcaagaaggttgctgggttgttggttcgagctatgactgggtcagttggcgtttctgtgtggagttagcttGTTCTCCGGTGTTctttggtgctccggtttcccccactgtccaaagacatgcagtacaggtgaattggttaaattGTCTAAATTAAATTGTCTAAAAATtaaattggctaaattgtccgtagtgtacgagtcagtgtgtgtgtgaatgagtgtgtgtgtggatgtttccaagagatgggttgcggctggaagggtatccgctgcgtaaaaacttgctggataagttggctgggcgactccggattaataaagggactaagccgaaaagaaaacaaatgaatgagttgacacaaaaatacacaagaagagactttcacttcacgcatagtttgtgaatgaacagacttgCGTGTACGAGTTGCAGATGTGGTTATGAGGCTGAATTTGAAGTAATCAATCAGAGAACAGAAGAAAGTGTATTACTTTGATAATTTAATATGGCATATTATTAATGAAATTCCAAAATTAtagtataatttttattattaatttctggggattaattatttgttaatttctCGCGGCCCACCAGCAGGATCGCTGAAGCCCACCGGTGGAGAATCCCTGATCTAGGCGTTTCCATAAAGCAGATTTTCATGTGATATtctaaaatgcgcataaaaattggtggatggaaacatagctatcgTGTGTTACCTAGAAGTCTTGAATTTAGCCAGAAGGTTGAATTTATTACAATGCATTAATTGTTGCTACCACTGTAACTGAAGGTAAGTTGGAAATGTTTGGGTTTAGATTATCTCCAAATTCTTCTTTTTCCTGTTTGTGGGTTAAATGTACGGACTcgtttttgtttcgttttgtctTTACATCCGAATCTTCGTTCGGAGTTATGGGAAACGGGGATGCAAACACTGTACATGCACTTTACAAATGCAAACGATTTGATTTTGTTGACAGTGCCTTTATTTTACAGATGTGTTTTGGTAAGTCCGATGCCTTTTTTTATTAAGAGATTTGAATTTAGTGCAATACTGTTTTTCAGAATGACAGAATTGTTGAATAGGATTCGGTGTTCAGTGGTTGGCAACCTTCAGAGTGAAAATAGTATGTATAATATAGATTATATatcaatattattcatatttgaGATGTTGAAGTCAGACACTCCAGCAAATGTAACTAAAAAGGATTGAACTATAGTTTATGAAAGTGGggaggcatggtggctcagtggttagcactgtcgcttcacagcaagaaggtcgctggttcgactccctactgggtcagttggcatttctgtgtggagtttgcatgttctcccagtgttggcgtgggtttcctccgggtgctccggtttccccacacagTCCGAAAACAGTCTCTTTaagagaattgaataaactaaattggccgtagtgtgcatgtgaatgagtgtgtatagatgtttcctagtactgggttgcagctggaagggcattcgctgtgtaaaacatatgctagataagttggcggttcattccgctgtggtgaccctagatgaataaagagactaagccaaaggaaaaagaaaaaatgaataaatatatatatatatatatatatatatatatatatatatatatatatatatatattagtccaTATTTGAGATGTTTAAGTTAGAGACTGATATGAACAAATCCTGAACCATCTGaaccaaataatacaaataacgtGTATGTTTTCAAGCGTCCAAAGACACCTTTTAATGTAGTTTATTctcatatatttataaaatatatgaaaaaaataacaatcttTAATTTTTTACCATGATTAACAGAACGTCAATTGGTTCCAAACTATTTTACAATTCTTTTTTtctactaaagaagatattttgtagaaagctgaaaacctgtaaccattgacttccattgaattaaaaaaaataataatcctacatttaccatgatttacagaatGTCATGCAGTGTAAATCGTGTCTTCTAAGGCATATTTACAACAATGAAGGCATTTTAAAAGCTATTTATTGACAGTTTCACATTTTGGccacaaaatatttattattaccattttcaGCCTTTATATTTGTCTTCCAAACAATAGATGGGTCTTGATTTCATATTTCGTATGCTCAATTTGTTGTACAGAagttatttgaataaataaattaggcaCTTTACTGGCATTTAATAGCCTCTATGTCACttacctatttttattattacacaaaGGATATTTCTCATCTTTGACCCCCATACAATTATTAAAAGATGGAAAACAGATTGGGAAAATCaatataaatgtattcaaatagcACTTAATTAAAATTGCACTTAATGTCAGAAACGTTGCCGACTGCTGCACTGAATACTGAATTACTGATATTACTGagattatatatataatgttgagTTGCTCGTTGCTCCAAACAGGAATCCATGAAAATTGGCAAAAGCTACGTTCAGTTAATTGAGCTCTTTTAACACATCTGATGGCTTCTGCTATGTAAAAAGCGCTCCTGTGTACTTCGAAACTGAATGTCATGCACTGAAATAAACACTTCTTACTTTGCTTTTAGCTTTGTTTATTTACTGCCTTCAGTGTATAATATGTATTGCCTCTTTAAGTTGAATCTTGTTGACCCTGTTGAATGTCAAAATCAAAAAATGTAATCATtgattttcttaatttttaataaaaggaTATGCAGAATAGTTG

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-081104-154 Predicted to act upstream of or within cell division and protein monoubiquitination. Predicted to be located in several cellular components, including cytosol; lysosome; and microtubule cytoskeleton. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human KLHL22 (kelch like family member 22).

Ensembl:

ensembl_id ENSDART00000129372

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072294 lncRNA upstream 121078 51581729 ~ 51586703 (+) False XLOC_036039
TCONS_00072293 lncRNA upstream 121078 51581729 ~ 51586703 (+) True XLOC_036039
TCONS_00072292 lncRNA upstream 541932 51160606 ~ 51165849 (+) True XLOC_036038
TCONS_00070553 lncRNA upstream 721306 50979018 ~ 50986475 (+) False XLOC_036036
TCONS_00072291 lncRNA upstream 1175593 50531703 ~ 50532188 (+) False XLOC_036030
TCONS_00072297 lncRNA downstream 48791 51775422 ~ 51778591 (+) False XLOC_036041
TCONS_00072296 lncRNA downstream 48791 51775422 ~ 51778591 (+) False XLOC_036041
TCONS_00072298 lncRNA downstream 48793 51775424 ~ 51778591 (+) False XLOC_036041
TCONS_00072299 lncRNA downstream 48800 51775431 ~ 51778591 (+) False XLOC_036041
TCONS_00072300 lncRNA downstream 48865 51775496 ~ 51778591 (+) False XLOC_036041
TCONS_00070558 mRNA upstream 560187 51084993 ~ 51147594 (+) False XLOC_036037
TCONS_00070557 mRNA upstream 560187 51084993 ~ 51147594 (+) True XLOC_036037
TCONS_00070556 mRNA upstream 580941 51050554 ~ 51126840 (+) False XLOC_036037
TCONS_00070554 mRNA upstream 680240 50983551 ~ 51027541 (+) False XLOC_036036
TCONS_00070555 mRNA upstream 680740 50985798 ~ 51027041 (+) True XLOC_036036
TCONS_00070561 mRNA downstream 232337 51958968 ~ 51986997 (+) False XLOC_036042
TCONS_00070560 mRNA downstream 232337 51958968 ~ 51986997 (+) True XLOC_036042
TCONS_00070563 mRNA downstream 557444 52284075 ~ 52297799 (+) True XLOC_036044
TCONS_00070564 mRNA downstream 587911 52314542 ~ 52350684 (+) False XLOC_036045
TCONS_00070565 mRNA downstream 587946 52314577 ~ 52350358 (+) True XLOC_036045
TCONS_00070552 other upstream 739782 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 1888910 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 2327478 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 2602730 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 2974923 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070562 other downstream 435230 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 804306 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 1296908 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 1297048 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 1519011 53245642 ~ 53255762 (+) True XLOC_036071

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_03142876_03156191.mRNA True 4313 mRNA 0.46 6 CI01000050 3142811 ~ 3158564 (-)