RNA id: TCONS_00072301


Basic Information

Item Value
RNA id TCONS_00072301
length 2814
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_036041
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51775422 ~ 51778591 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCAGGTAAAAATGTAAGTGTATTTTTGGTTTTGTGATATCATCAATGCAGCAAGTCAGAAATATGAATCTTCTCAGAAAAAAGCCTGAGGACAGTAATAATACCCCATAAATCTCCACAGAAAAGCTCCATGTCTGCGGACCAGAGCACTGATCCAGCGCCGTCTTACATTCTCAACACAAGCATAGAGACAGCGTACAAAAGACCACGACCcacaaaatattactttacaaagaggaaaaaaatagaAACATCTCTTCATCTGTTTTCAGGTAGTTTTGGTCACACACACGTGCTCATTGCATCCCTTCAAAAGTCTTTTCTTCCAATATTGAAAAACTCCAAAAATACTGCAAACTATTTCTCCATCTACGAGTAGAAAATGCTCTGTAAAAAACATTCCTCCTTCTAAATCAGAACTGGACAAtatcatcatcaaaaaaaaaaaaaaaaaaaagccagatctGGTAGTAAACGCCACCAGCACCAGCCATGAGCgacgtgaacacacacacagaaagtcaTTTACTTCAAAATAATGCTCCAAAATACAGTTACAAGTGCTAATCCAACGACAtggttaaagggagagttcacctcCAACTTATGTGTTTACGTCTCTTTAGTTTCACCATAAGCTCTGTTCGCATAAAGATTATgctctttgtgtccaaacaataaaaataagtggctttaaaaaaagaaacacgcACCAAAAAAAGCTGTACGAATGACTTGTGCCCTATGTTAAAAAGTTTTATATCTATTTGGTACATCACAAATACAGCTGTGGTGAAAAATTGCTTGAGAAATCGATTCTCATGCATCGCTATTTTTagaagatggcgctctagactagtttttagatgctgctcaaggctagttttcaacagcagacgaCGCACAAGGTGAGTTTTCAaaaacagatggtgctctaggtgaGTTTTCAacaacagatggcactctagcctactttttaacagcagacagcactctagttGAGTTTtcaacaacagatggcgctctaggtgaGTTtttagatggcgctctaggctagttttcaacagcagacgaCACTCTAGGtgagttttcaacagcagacagcgctctagcctagtttttaacagcaggcggtGCTCGAGGGGAGTTTtcaacaacagatggcgctctaggctagttttttaacaattAACAGCTTTCTGGACTAGTTGTAACAGCAGatgatgatgctctaggctagttttcaataACAGATAggactctaggctagtttttttaaacaatggacatcgctcttggctagtttttaacagcagatggcgctctaggctagtttttaacaattaATAGCTCTCTAGACTAGTTTGAACAGCAGATGATGatgctctagggtagtttttaacaacagatggcactctaggctagttttcaacagaagGTGCagcactaggctagttttttaacaaataatagctctctaggctagttttcaacaacagatagcgctctaggttagtttttttaaacaatgaacattgctctaggctagttttcaacaacAGATGGCactaggcaagtttttaacaccagatggcaCACTAGGCTAGTCTTTTTAAACAACTGACattgctcttggctagttttcaacagtagatggtgctctagggctagttttcaacagcagatggtgctctaagctagttttcaACAGAAGGTGGAGCTCTAGCTAGTTTTTTAACAATTAACAGCACTCTAAATTAACAGCAGATCGCGATCTTGGCTAGTTTTAACatcagacggtgctctaggctactttttaacaacagatggcactctaggctaatttttattactagatggtgctctaggccagtttttaacagcagacggatAGGCGCTCAAGGatattttataacagcagacggggctctaggctagtttttaacatcagatgaTGCTCtgggatagtttttaacagcagatggcactttaCAGCTGTTcttaatagcagatggcgctctaggctagtttttaatagcagatatcGCTCTAGGAGAGTTTTTAATAAAAGACGGCACTTTAGGCAAATTTCTAATAGTAGATAGTGCTCTCggctattttttaacagcagacagcgctttagatttgttttaaaaatcactctaggctaatttttaacagcagattgagCTCTAAGCTAGCTTTTAACAGCGGACAGTGATCCACACTTAAATGTTTATGCAGACAAGTGCTTGTGCATTCAGCCGAGTACTGCAAGTTGGCTTGCATGTCATGAGATTAATGTAAACACTCTTATAATTCACTTAAACCGTTCCTAAATTTCTTAATTTATATTATAGGCTTGAgtggtatttgtaaggaattGGATGCAAGCAGAGTATGGCTGTTAGTAAAGCACACAtcgccacctgctgttaaaaatacattctaAAAATTGCAGAATTGATTTTCTGAATgatttttcaccacagctctaATCAAAAAAGCCCGTTACTGACTGAAAATACAGTGTGAAGTCCAGATTCAAGAGTACACAAACATACGTGAGAGTTTTAAATAAGGGCTAAGAACAAGAATGTACATAAGTAAACTTAAATTACGCAAATTTCAGCCTATTTCttggtattttaaatgtgatttagtAATATCGCTCTACGAAAAAGAGCAGCAAGAACATTCTGCTAAATTTGTTCTTTATTGTATGTTCGGTAGGATGAATAACGTATGGTTTGAAAGTGtaattattttggggtgaactttccatttaaccatttttaattatatatatatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072295 lncRNA upstream 48596 51725646 ~ 51726902 (+) True XLOC_036040
TCONS_00072294 lncRNA upstream 188795 51581729 ~ 51586703 (+) False XLOC_036039
TCONS_00072293 lncRNA upstream 188795 51581729 ~ 51586703 (+) True XLOC_036039
TCONS_00072292 lncRNA upstream 609649 51160606 ~ 51165849 (+) True XLOC_036038
TCONS_00070553 lncRNA upstream 789023 50979018 ~ 50986475 (+) False XLOC_036036
TCONS_00072304 lncRNA downstream 736597 52515188 ~ 52530506 (+) True XLOC_036051
TCONS_00070577 lncRNA downstream 752347 52530938 ~ 52534598 (+) False XLOC_036052
TCONS_00071972 lncRNA downstream 818797 52597388 ~ 52604066 (+) False XLOC_036053
TCONS_00070579 lncRNA downstream 822467 52601058 ~ 52601775 (+) False XLOC_036053
TCONS_00071973 lncRNA downstream 822666 52601257 ~ 52604066 (+) False XLOC_036053
TCONS_00070559 mRNA upstream 48867 51707781 ~ 51726631 (+) False XLOC_036040
TCONS_00070558 mRNA upstream 627904 51084993 ~ 51147594 (+) False XLOC_036037
TCONS_00070557 mRNA upstream 627904 51084993 ~ 51147594 (+) True XLOC_036037
TCONS_00070556 mRNA upstream 648658 51050554 ~ 51126840 (+) False XLOC_036037
TCONS_00070555 mRNA upstream 748457 50985798 ~ 51027041 (+) True XLOC_036036
TCONS_00070561 mRNA downstream 180377 51958968 ~ 51986997 (+) False XLOC_036042
TCONS_00070560 mRNA downstream 180377 51958968 ~ 51986997 (+) True XLOC_036042
TCONS_00070563 mRNA downstream 505484 52284075 ~ 52297799 (+) True XLOC_036044
TCONS_00070564 mRNA downstream 535951 52314542 ~ 52350684 (+) False XLOC_036045
TCONS_00070565 mRNA downstream 535986 52314577 ~ 52350358 (+) True XLOC_036045
TCONS_00070552 other upstream 807499 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 1956627 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 2395195 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 2670447 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 3042640 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070562 other downstream 383270 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 752346 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 1244948 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 1245088 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 1467051 53245642 ~ 53255762 (+) True XLOC_036071

Expression Profile

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