RNA id: TCONS_00070560


Basic Information

Item Value
RNA id TCONS_00070560
length 1098
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_036042
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51958968 ~ 51986997 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGGATGCTGCATGTCTGCGGAGGAGAAGGAGAGGCAGAGGATCAACCAGGAGATCGACAAACAGCTGAGGAAAGACAAGAAAGACTCGCGGAGGGAACTCAAACTGCTGCTGCTCGGCACAGGTGAGAGCGGTAAGAGTACATTCATTAAACAGATGCGGATCATTCATGGCTCCGGTTACACTGATGATGACAAGAAGGGCTTCATTAAACTCGTCCATCAGAACACGCTGAGTGCCATGCAGTCTATGGTCAGAGCTATGGACATGCTCAAGATCGCCTACGCTAACTCTGAAAACCAGGCTCACTCTGCGCTGGTCAACGACATTGAAGTGGATAAAATCATGAGTTTGGATGAGACTCAAGTGAAGGCTCTCAGCAGTTTATGGAGCGACAGCGGGATTCAGGAATGCTACGACCGCCGCCGAGAGTATCAGCTAACCGACTCTGCCAAATATTACCTGAGTGACCTGGACCGAATCGCCAACGCAGCGTATGTTCCCACTGAGCAGGACATTCTGCGGGTCCGGGTTCCCACTACAGGAATCATCGAGTACCCCTTCGACCTTGACAACGTCATCTTCAGGATGGTGGACGTCGGGGGTCAGAGGTCAGAGCGCAGGAAGTGGATCCACTGCTTCGAGAACGTGACCTCCATCATCTTCCTGGTGGCTCTGAGTGAATACGACCAGGTCCTCGCTGAGTGCGACAATGAGAATCGCATGGAGGAGAGTAAAGCTTTGTTCAAAACAATCATCACATATCCCTGGTTCCAGTCTTCATCCGTCATCCTCTTTCTGAATAAGACTGACATCCTCAAGGAGAAGATTGTTTACTCTCACGTGGCCACGTACTTCCCAGAATTCACAGGACTAAAAAATGACCAACagattgtatttttaggtccCAAAAATGACCCAAAGGCGGCGCAGGAGTTTATTCTGAAGATGTACCAGGAGGAGAATGAAGACAAGGACAAAACCATCTATTCTCACTTCACCTGCGCCACAGACACCGAGAACATCCGGCTGATCTTTGCCGCGGTTAAAGACACAATCCTGAGACACAACCTCAAAGAGTTCAACCTGGTCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0060158 phospholipase C-activating dopamine receptor signaling pathway biological_process
GO:0001508 action potential biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0031826 type 2A serotonin receptor binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-76 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in action potential; adenylate cyclase-modulating G protein-coupled receptor signaling pathway; and phospholipase C-activating dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in barbel; gill; lip; mouth; and taste bud. Orthologous to human GNA14 (G protein subunit alpha 14).

Ensembl:

ensembl_id ENSDART00000139509

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072299 lncRNA upstream 180377 51775431 ~ 51778591 (+) False XLOC_036041
TCONS_00072304 lncRNA downstream 528191 52515188 ~ 52530506 (+) True XLOC_036051
TCONS_00070577 lncRNA downstream 543941 52530938 ~ 52534598 (+) False XLOC_036052
TCONS_00071972 lncRNA downstream 610391 52597388 ~ 52604066 (+) False XLOC_036053
TCONS_00070579 lncRNA downstream 614061 52601058 ~ 52601775 (+) False XLOC_036053
TCONS_00071973 lncRNA downstream 614260 52601257 ~ 52604066 (+) False XLOC_036053
TCONS_00070559 mRNA upstream 232337 51707781 ~ 51726631 (+) False XLOC_036040
TCONS_00070558 mRNA upstream 811374 51084993 ~ 51147594 (+) False XLOC_036037
TCONS_00070557 mRNA upstream 811374 51084993 ~ 51147594 (+) True XLOC_036037
TCONS_00070556 mRNA upstream 832128 51050554 ~ 51126840 (+) False XLOC_036037
TCONS_00070555 mRNA upstream 931927 50985798 ~ 51027041 (+) True XLOC_036036
TCONS_00070563 mRNA downstream 297078 52284075 ~ 52297799 (+) True XLOC_036044
TCONS_00070564 mRNA downstream 327545 52314542 ~ 52350684 (+) False XLOC_036045
TCONS_00070565 mRNA downstream 327580 52314577 ~ 52350358 (+) True XLOC_036045
TCONS_00070566 mRNA downstream 390519 52377516 ~ 52403265 (+) True XLOC_036046
TCONS_00070567 mRNA downstream 428617 52415614 ~ 52431522 (+) True XLOC_036047
TCONS_00070552 other upstream 990969 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 2140097 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 2578665 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 2853917 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 3226110 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070562 other downstream 174864 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 543940 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 1036542 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 1036682 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 1258645 53245642 ~ 53255762 (+) True XLOC_036071