RNA id: XM_039782531.1


Basic Information

Item Value
RNA id XM_039782531.1
length 6470
RNA type mRNA
GC content 0.48
exon number 3
gene id bcl11bb
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12707218 ~ 12739384 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACACTGTAGGGGAACTATAGGAAACATTGGACCTCTGCTTGTTGGACGAGGAGGAGGTGTCTTGTCTGCCCGCctgctctctctcgctctctctctctctctctctctctctctctctctctctctctctctctcaatcaaCGAGGCTTCTGCCACCAGAGCCAAGAGTTGCCGTTCCGCGCACCGATGCCAAAACGCGCAGGAGGAGTCAGTGCCAAAGGGTCATTTTAGCGCACCACTGCTGAAATGGAAGGACTGTAGGGAATCCTAGAATAAACAGCAGCCATTTGACCCCCCCAGATGATATAATCATATCATTAAAACTgagaaaagggaaaaggagCCAAATAAGAGCCATCACCAACGGAGTGCTCTGTACTTCATCTGACTGTCACCACGGTGTCTGCAGAGGTGGGCAGTccaggatttttgttttagttttttctgcaGAAGGTCATTGCCAGACATACCTGCCTTCATATATCATCATCCTCATCGGCCGCTTGTAGCCAACTGCTTCCTAAAAACTACACTTTGGCTTCCTCACTCCAGGTGTTGCTTCTTCCTGAAGACCCTGCGGGACATTTTGGACAAACTGGTCTTCCATCCTTATTGCGCTCCTGTCCGACTCCTCGCCACCCGAGTCCGAGCGCGCCTCAAAGTTGCAGCCGAAGACTGTGAATAGTACAGGGATTAGGAGAGGGAAAGGTTGGTTACCTACGAGCCAGAGAAGACCGACACCACGGTCCAAGCCGACTCCAAGTGCCGTTCACCGGGCGATGCCAGAGTAAATGCCGGGGCAATGTCCCGCCGCAAGCAGGTGAACCCGCAGCACTTATCGTTGACGCACAGGGAGACAGTTCGGGCAGAAGCCAATCATGATTCAGGGGCGGGATCTCCATCTCCGGAGCCGTCCACTCCCAGCCCTCGGAGAGTGGGCCCTGGGGAGCATGACATGCTGACCTGCGGCCAGTGCCAAACCAACTTCCCTCTGGGCGATATCCTGGTTTTCATCGAGCACAAGCGCCGTCTGTGCCGGGGCCCCCGAAGCGGACCGGTGTCTTTCTCCAAACCTGGGGAGAATGGCGGACTCACGGGCATTCCCATCTCACCCAGGGCCAGGTCACTGGAGCTGGGCAGAGGGTCCATTCCGGTGGAGGTGGGCATCCAGGTGACCCCCGGCAGAGAGGAGGATCTGGAGAGGAGCATGACGCCGGCCAGGGGGATCTGCCCCAAACGGGAGAGAGGAGACAAAGATGAGCCGTCTAGCTACATCTGCACTACCTGTAAGCAGACCTTTACCAGCGCCTGGTTCCTGCTTCAGCATGCCCAGCACACTCACGGCATCCGCATCTACCTGGACCACCACCCAGTCAACTGCTCCCTCACTCCCCGCATGGCTCTGCCTCCACCCCCGTGCGACGCCCTGCCCCGCTCCCCTCTCCCTACTTTCCTCGGTGACACCAACAACCCATTCCACCTCCTCCGCATGGCTGCGCCCCTGCTCAGGGaacacccccctcccccggGCTACATGGAGACCCGGCTGCCTGCAACACCACCCTTTGTCagccctcccccaccccctagGACCCCTCTAGAGCGGCTGGGCCCAGAGGAGATGGGGCTGCTGTCCCAGCACCCCAGTGCCTTTGAGAGGGTGATGCGGATGGCCCCCATGGACCCTCCTTCCATGGACTTCTCCCGTCGTCTGAGAGAACTGGCGGGCAACACGACCAATAACGGGGGGCccactcctcctctctcacCCAACCGTGTGCCACCCATGCACCGCTTGCTGAGCCCCACGCTTTTCCAGCCTGGCCCCAAGCCCCCGGCGTTTCTAACCTATCCCCCACAGCCGCCCACTTCTCAGGGGGGACACGGTTCTTCCAGCCCTCCTGACAGCCAGGGTCAGAACCAGACCCCGGGGAAATCCAAATCCTGCGAGTTCTGTGGCAAGATTTTCAAGTTCCAGAGCAACCTGATCGTCCACAGACGCAGCCACACAGGGGAGAGGCCGTACAAGTGTCATCTCTGTGACCACGCCTGTTCCCAGGCCAGCAAGCTTAAGAGGCACAtgaagacacacatgcacaacaaGTCTGGCTCCATGAGTGGCTCCCCCGAACAGGGAAATAGAGAAGAGGTAGGAGAGGGTGAAGAAAAGAGCAGGGAGGGACATTCAGGAGGGATGGGCATGGacaatgaggaggaggaggaggaagaggaggaagaagaagaggaggaagaggaagaagaggaagaactgAGGAATGGAAGTCGGCCAGATTCCAACTTGAGCGAGGACTCCCAGGAGTTCAGCCAGAATAGGGAGAATGGCCCGAGACAGTGTCCCGAGGAGAAACCCCTGGGCGGGGATAGAGGAAGCGCACGGGCAGATGTGGGGAAACAAGCATTGGGGATAATGGACCCTAGACAATcaactaaaaaaaactaacaagagAAGCCTCGAGATAACCTTTTGGCAATGgcggagagagaaacagagggatagaaagagaaaaacaaaaaaagagatcaGCAGGTGAACCAGAGGCCCGTGATGAACGGCAGGATCAGCGTATCCGAAGCGGACTCCTTCCCTGGGCTGTTCCAGCGTCGGCCCACCCCCATCACCAGCCCAAACCCCTCCTCCAACAACAAGAGGATCAAGATAGAGAAGGAACAGCTGGAGCTTCCCCCAACCTTACCCCTCATCTCCCCGGAGAACGTCTACTCCCAGCTCCTGGCTGGCTACGCCGCGTCGCGCCACTTCATCCGAGAGCCCTTCCTGGGATTCACAGACTCGCGTCAGTCGCCGTTCGCCACCTCCTCCGAGCACTCCTCCTCAGAGACGGGGAGCCTCCGCTTCTCCACCCCGCCCGGGGAGCTGATGGAAGCAGGAAGCGCGTCGGGCCGCAGCGGCAGCAGCACTCCTCACCTCCTGCGGGGACCCGGGCCCGGCAGGCCCCCGAGCTCTAAGGATAGGAGGAATGACACCTGCGAGTACTGTGGCAAGGTGTTCAAGAACTGCAGCAACCTGACGGTGCACCGACGCAGCCACACGGGGGAACGGCCCTACAAGTGTGACCTGTGCAGCTACGCCTGCGCCCAGAGCTCCAAGCTGACGCGCCACATGAAGACCCACGGGCAGTTCGGGAAGGAAGTGTACCGCTGCGACATCTGCCACATGCCCTTCAGCGTCTACAGCACGCTGGAGAAACACATGAAGAAATGGCATGGCGAACATTTGATGGCCAGTGAGGTCAAACTGGAGGAGGCGGACAGAGGTTAAGCCAGCAGCCGTTAGTTATACAGCCTACATTGACCACGagcaaacactcacacacacatggacaaatgcagacacacacatgcacacacaaaatcccTATAACCACTTCTTCAGCTATGGGGCTTGGCTggataatctctctctctctataaaaaaaaataaaaaatgagacTGATTGatgttcatctttttttcttgtcaCAGAAACTGCCACCTGAGAATATAAACAAAGGGAAACTTTAATGAGAACTTGTCTGGAATGCACAACTTGGTGTTTCTTGGCAAACCGTCTGAGGATTTTATCAGTTAGGAATCCATGGAGCCTTTCTACTGTGCAataatttctgtatttattggaTTTTTGTAATGATATTTGGCATGTGCAGGTACATCTTTGTGGGATTTCATATGGAGTTAGTTTTGAAATgtgctaaaacgttttttttttgtttttgtttttttctaaaatgcGATAACTGGAAAGAAGTCACCCTAAATacaaattttctttttcttcttctctcctttaaGGAAGCTTATTATCATGTGTGAGTAAAATTGTGCAAAGCAGTTAGCtttttaaagttaaaataattgttttctaTATAAACTTGCAGCAGCGGACTACAATCCACTCCCTCATACAGGCCTAAAGCACTGAATGTCAGCCTGACAATAAAACATCATGCTGGATTTTAAAAATCCAATCTTATCTTATAGACCTGATAAGTTACTACTTTAACTTAGTTACTACTTAGTCCTTACTTTAAATTTATTCAGGGAATTTGTCCTTTTAAATATTGGCGTGTGAATAATTTCAAAATGCAGTTACTGTATTGCTGTCCTTGCTTCAGTCAGGACATAAATAAAGGTTGCACTTAGTGGAGCCTTAACTGATACTCAGTACATTCCCGGTGTAGGATTAAAATACCATATTTAAATGAATATGTTGAATAAGTTAAGACTACTCGTGATTAATGTGAGAAGGAGAACAGTCCTGTTTTATGgttttgtaaatatattttttttttctatatgttAAAGTAGCCCCGACTGTACGTGAACAATGGCCTAAAACTAAACAATCAGAAGACCAGCTGCTTGCATCATCCACAGTAAATGCTACGTGTAACTACCATTCATTATTGCTTTATTAGAACCACTTGATTATCTCCCCCACTCCCCCACCccatttgaaaaaaagccatttgTTATAGCTCAAGCTACTTCAACAATTGTAACAGCCTTCGAATCattctccatctccctctcgTGTCTGCTGTGGCATCTCTCTCAGACCCGGGTCGACTTCACCGTGTCCCCTTAGGGCCCACAAAATGGTTCCAAATGAAATTCATATCAATATgtgttagcgtgtgtgtgttcttctctctctgcagtgtGCTCTAAGCCTCTCTCCGACGGCGTCTTTTCACAGTTCACTAGCTCAGATTCATGCATTAGAGCGGCTTTTAAAAGGAAGCCTGTTCATTCGCCTCACAAAGTGATATGGGTTTAACTCTCAGTAACAGATTTTGAGACAGTGTGCATGTTCGTGACTTTTGgggattatgttttttttctttttttttctgcatcgtTCATCCTGAAATGAATCTGGTAGAGAAAAAATAGGCTATATGAGTTATGATAATTTTGAGCACAGCTGCCATGGGACCTTGAGTAGGGGCTATTCTTATGGTATGAATGAAAGATTGGAACTGAGAAATGAAGAAGTGTGTGAAAGAAATGGacggatagagagagagagagagcaagaccTTGACCAGGGAGAAGAGCCATTTAAATGAAATTGGAAGCATgtgaaaagtgtgtgtttttttttgtacccaAACGCACATCTACTGGCCACATCTTATAACAGAGcgtgagagggagggagacggCAAAGCCACACGAAAGGAGATTGAGACtacatctttgtttttttgtactccAATTCTCATCACAATCATCTTAAAGTTTGACCTGCCATTTTGGCCTATTGTCAGGTTTTATCTGCGCCATTTTGTttggataggaaaaaaaaaaagagattatgCTGTATCTTGTATGCAAATTCctctttttgtgattttttttttttagaaaggaAATGATGTTGAAGCCGCAGCAGCTCTCCATAAGCTAGTTCAATACGTTTTAAGGAATTCACGGGAGAAGTGCGATCGGCTGAAGAGCTGCTTTCGGCTCGCTTACACATGTTGATGCATGAGAGCAAAAATCAAGATCCTGTTGTATACGCACGGTGTATTCATTCCAGGAAAACTCAGTTCAGTTCTAGGCTAAAATAAGGCATACAACTATCAAATATTTCACATCCACGCGGTGAACGTGGAACCTGGACAGAGATCCAAATCACACATGGACATTCAGTCTTACAATATGTTTACAGTGTTGAAGTATGCCATGAATGAAATATGTGTAAGtgtttaaaaatgataaaagtattgttttctcCAATGTTCTTTCAAATGCCATAGCAGTTTTTGTATGATTATCCTGGTGGAGGGATTTTATCTTCATGAATATGTTTCTGTATGATTACTTGTTCACTGTATGGGAAGACAATTTTCGAAATGTGATATTGCAGAATCATGCCagattattatttgtttttctaaCAAGAGTGGTGCCATTATTgacttttatatttaattttttttttattttgaatgaaTTTCCTGTTGTTGGTTTGGTGAAGCTATCCTCcatggatgtaaaaaaaaaaaaaaaaaaaaagagagatgttCCTAAAGGAAGAATCTTTGGCAGGGGAATGCAATGCTTTATGCAGGAAGACTTTTCCAAATCAATTTTCTGAGACATTCATAAacattatgttttgtttttgtttttatcctcATGGTTGGTTGAAGGTCTTGTGACAGCACTTACAACTGTAATTTTCAatacattttcatatttcaCTTTTCACAACTTTCACTTACactctttgtaaaaaaaaaaaagaaaaaaatagtttccgttcttttttggggggagtgcatcattgtgaaaaaaaagtgatttcagAACAGTACACATCTGCTGTTTTGAacatatatgtatttttgtaatgTGTTGAAAAATCAATACAAGAAAGCCAACACTTCAATAAATGTTGCAATTGCTCTATGATTGAAGCAA

Function

GO: NA

KEGG:

id description
K22045 BCL11A; B-cell lymphoma/leukemia 11A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249032 lncRNA upstream 3976 12701168 ~ 12703242 (+) True G183896
TU249021 lncRNA upstream 67140 12639355 ~ 12640078 (+) True G183891
TU249016 lncRNA upstream 67191 12639318 ~ 12640027 (+) False G183891
TU249020 lncRNA upstream 67191 12639355 ~ 12640027 (+) False G183891
TU249017 lncRNA upstream 67191 12639718 ~ 12640027 (+) False G183891
TU249093 lncRNA downstream 6700 12746084 ~ 12747667 (+) True G183933
TU249091 lncRNA downstream 207615 12946999 ~ 12991413 (+) False LOC120546167
TU249087 lncRNA downstream 217133 12956517 ~ 12991805 (+) False LOC120546167
TU249088 lncRNA downstream 217133 12956517 ~ 12962497 (+) False LOC120546167
TU249090 lncRNA downstream 222328 12961712 ~ 12991413 (+) False LOC120546167
XM_039781283.1 mRNA upstream 16418 12640656 ~ 12690800 (+) True ccdc85cb
XM_039781284.1 mRNA upstream 16418 12640656 ~ 12690800 (+) False ccdc85cb
XM_039781286.1 mRNA upstream 16418 12640657 ~ 12690800 (+) False ccdc85cb
XM_039781285.1 mRNA upstream 16418 12640658 ~ 12690800 (+) False ccdc85cb
XM_039781281.1 mRNA upstream 68693 12632013 ~ 12638525 (+) True LOC120546362
XM_039781115.1 mRNA downstream 149877 12889261 ~ 12905695 (+) False agbl5
XM_039781116.1 mRNA downstream 151303 12890687 ~ 12907305 (+) True agbl5
XM_039781117.1 mRNA downstream 151303 12890687 ~ 12907305 (+) False agbl5
XM_039781118.1 mRNA downstream 169583 12908967 ~ 12922556 (+) True selenoi
XM_039780919.1 mRNA downstream 267253 13006637 ~ 13007969 (+) False LOC120546167
XR_005637057.1 other upstream 1976436 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 2040746 10622736 ~ 10666472 (+) True G183540
TU248395 other upstream 2594857 10111237 ~ 10112361 (+) False LOC120546402
XR_005637038.1 other upstream 3385790 9296061 ~ 9321428 (+) False LOC120547211
TU248071 other upstream 3669525 9020960 ~ 9037693 (+) False LOC120546611
TU249092 other downstream 251292 12990676 ~ 13008411 (+) True LOC120546167
TU249176 other downstream 406091 13145475 ~ 13150078 (+) True G183994
TU249175 other downstream 466924 13206308 ~ 13247416 (+) False G183994
XR_005636930.1 other downstream 1285100 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 1622957 14362341 ~ 14381187 (+) True G184231

Expression Profile