RNA id: TU249092


Basic Information

Item Value
RNA id TU249092
length 1647
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC120546167
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12946999 ~ 13008411 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAACTGAAGCACAGAACAGTACCTTTTGCATGAATGCTCTTGGCGCTCCCCGGCGGGGTCGACCCGGCTGCGAGTAAGAACCTTGTACACCAACTCCACTGTAGGGCTGCTGTTGTCCAGTCGCTGAACCACTCTGACTAGCACTCCCAATACTCGCCTGCCTGACGGTGCGATGTCTATAAGGGATGTTCTTGGCCTGCTGAGTGCTGGGATAGTTGTCCCTTGTGTAGAGAGCATCCTCCCAGCTGTCCCTCCCCTGCTCAAAGCTGTTGCTTGTGTAAATATACGTGCCTGGAGGATACTGGCCATTCAGGAACATGTAGTCATAGGAAGGGTAAGGATATGGGACCAGGCCTGATGGCACAGGTCCTCCATTAGAGCCTTGTGAAGGCTGTGCTGCATAGACAAAACGAGGTGGTGGCATGGAACCTTGCGCTTCGCTCTCAGATTCAGAGTTGCCTTGCTCGAATCTTTTCTGTTCCTGGAAAAGTTCCCCTGCCTGGTACTGTGGAAGAAGATAGTCAGGCTGGATCACAAAGTTAAGGCCAAGTGGTCGAAGGGCAGGTCCACTGGCAGCAAACTGCTGAGTGGACCTGCCCTTCGACCACTTGGCCTTAGCAATCTGATCCGGCCTGGTTCTTTTCTTCCACAGTACCAGGCAGGTGAACTGATCCAGGAACAGAGAAGCTTCGAGCGAGGCAACTCTGAATCTGAGACCGACGAGCAAGGTTCCATGCCACCACCTCGTTTTGTCTACGCTGCACCTCTTTTCTATGTTGCACCACCTTCACAAGGCTTCAATGGAGGACCTGTGCCATCAGGCCTGGTCTCCTATCCTTACCCTTCCTATGACTACATGTTCCTGAATGGCCAGTATCCTCCAGGCACGTATACTTACACCAGCAACAGCTTTGAGCAAGGGAGGGACAGCAGGGAGGATGCTCACTACACAAGGGATAATTATCCCAGCACTCAGCAGGCCAAGAACATCCCTTATAGACATCGCACCGTCAGGCAGGCGAGTATGGGGAGTGCTAGTCAGAGTGGTTCAGCGACTGGACAACAGCAGCCCTACAGTGGAGTTGGTGTACAAGGTTCTTACTCCCAGCTGGGCTGACACCGCCGGGGAGCTCCAAGAGCATTCATGCATAAGGTTGGCTAAGTGGTGACTCTGAAGTCTTGTCAATAAAGCTTACAACTTTTATGTTTGCCCTGGTTTACAATGTTTACTCACAAGATGCCTTACTCGTGTAGCGTAAGGTATAACTGGGTGCAGGTTTGACAGTCAATATTAATAGTCCAGAATGTGACCGCTATTTACAATCTGGCCATAGACCTACCACACAACACCAAGAACAGCCTACATAATGGCAAAACTATGCTATGAGCCAAATTCAGTCTGCTGCTTTGCCCATTTCTGGCATGACACCTTGTAGATTGATGCTATTCTAATAAATACATAAGGTAGTGCTACATAACGTATCAAAGTGTTCCTTGAATCTGAGCTCTGCTGCAGCCTCTCCTACACTAATAGGAGCAGGAactagtgtgtgtatatatatagcagtgatttttttttttttttttttgtaccatgaaaaatcaccaataaaggcttttaaaccaaatactatgTAAATGTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249088 lncRNA upstream 28179 12956517 ~ 12962497 (+) False LOC120546167
TU249093 lncRNA upstream 243009 12746084 ~ 12747667 (+) True G183933
TU249082 lncRNA upstream 251329 12737254 ~ 12739347 (+) False bcl11bb
TU249084 lncRNA upstream 251329 12738331 ~ 12739347 (+) False bcl11bb
TU249032 lncRNA upstream 287434 12701168 ~ 12703242 (+) True G183896
TU249178 lncRNA downstream 137064 13145475 ~ 13210406 (+) False G183994
TU249185 lncRNA downstream 162511 13170922 ~ 13172244 (+) True G184000
TU249274 lncRNA downstream 406829 13415240 ~ 13415570 (+) True G184071
TU249277 lncRNA downstream 425574 13433985 ~ 13434206 (+) True G184074
TU249278 lncRNA downstream 425801 13434212 ~ 13434504 (+) True G184075
XM_039781118.1 mRNA upstream 68120 12908967 ~ 12922556 (+) True selenoi
XM_039781116.1 mRNA upstream 83371 12890687 ~ 12907305 (+) True agbl5
XM_039781117.1 mRNA upstream 83371 12890687 ~ 12907305 (+) False agbl5
XM_039781115.1 mRNA upstream 84981 12889261 ~ 12905695 (+) False agbl5
XM_039782531.1 mRNA upstream 251292 12707218 ~ 12739384 (+) True bcl11bb
XM_039780898.1 mRNA downstream 48022 13056433 ~ 13066587 (+) True tbx18
XM_039780899.1 mRNA downstream 48022 13056433 ~ 13066587 (+) False tbx18
XM_039782720.1 mRNA downstream 131570 13139981 ~ 13141521 (+) True irak1bp1
XM_039782217.1 mRNA downstream 212695 13221106 ~ 13228478 (+) True enpp5
XM_039782214.1 mRNA downstream 221555 13229966 ~ 13249155 (+) True clic5b
XR_005637057.1 other upstream 2259894 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 2324204 10622736 ~ 10666472 (+) True G183540
TU248395 other upstream 2878315 10111237 ~ 10112361 (+) False LOC120546402
XR_005637038.1 other upstream 3669248 9296061 ~ 9321428 (+) False LOC120547211
TU248069 other upstream 3952983 9020960 ~ 9037693 (+) False LOC120546611
TU249176 other downstream 137064 13145475 ~ 13150078 (+) True G183994
TU249175 other downstream 197897 13206308 ~ 13247416 (+) False G183994
XR_005636930.1 other downstream 1016073 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 1353930 14362341 ~ 14381187 (+) True G184231
TU249525 other downstream 1516725 14525136 ~ 14529370 (+) True G184258

Expression Profile