RNA id: XM_039781817.1


Basic Information

Item Value
RNA id XM_039781817.1
length 3521
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC120546706
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13468235 ~ 13474159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTAATAAAAATATCAATTATGAAATATTTGTAACTTGCACTGCTAAAAACACGGCAGTTTCACCATAAGACAAAATGGTGGGATAAGACACTCCTACTCAACACATAGCTAGTTTTGTTAATGCCCTGACCTGTCCTTTAGAGGTGTGTTGTTAATGTCATTCAGGCGTAAGCAGCTATAAGTGTTCGTCACCCCTGCCTCGGCTCAGCCAGAGGGGATTAAGGCATGTACTTGGAAGGAGACACGACAGGCTTTTGCTATTCTTGAGTGCATAGGTATAGCCTAGGCATCTAGGCAACAATAGCTACTCTTGTGCAGGACCAGACCACATACAGGTCTCTGTCATCAATGTAAACTTTCTCACAGTCAtattttattcttctttttctatttcACTCCTTCATACCTGCAAGGATGGATCTTGGTAAGGCAAAGCTGCTTCGGACAGGTCTTAACACTCTACACCAAGCCATCCACCCTGTGCATGGGATAGCATGGACGGACGGCAGGCAGGTCTGCCTGACAAGTCTCTTCTTCATCAATGGTGAGGTGAAGTTTGGGGACACAAACGTTATCGGGCAGTTTGAGCATGTCTTCGGGCTCTACTGGGGCTCGCTGTGCTGCTCTGACTCGCCGGCCTTGCTGGCTGTTCAGCACAAGAAACATGTCACTGTGTGGCAACTGCAGCTCAGCGCGCTTGAGCAGAACAAGCTGCTGTGCACTCAGACTTGTGAGATGAGCGAGCCTTTCCCCTTGCTCTCCCAAGGCTGTGTGTGGCATCCTAAACTGGACATCCTGGCTCTGCTGACCAAGAGGGATACTTCTGTGCTGTTTTCCGTCAGGGTGGACAACAGGAGAATCAAAGCGGACATCAAAGGTAGTGGACTTATCCACTGTGCATGCTGGACTAAAGACGGTACACGCCTGGTGGTGGCTATAGGAAGTTCTCTTCACTCTTACATCTGGAATGACATCCAGAAGAGTCTGGTGGCCTGCTCCTTCTGCCCCATCTTTGATGTGGGAGGCTACATCTGTGCCATCGAGGCCACGGGGGACGCCCAGGTAGCTGTGGCTACGGAGCTGCCTCTAGATAAAATCTGTGGGTTAAATGCCGGCATAGCATTCGACATGCCGTCAGATGCTGAGTCCCTGCATAGCCACGGCTCGCATATGGTCATGTCAGAAGAAGACAACTTTCCGGACTTGAGAAGAAGATCTTTTGAATCGGAGAGGTCCAGCGTCAGCAGCTCAGGCCCTCTAGACCTCACCCACCTCCTGGCGAGGCACCGTCGCTCTGACCCCAGCCCCCTGATTCACCTGCGTCGCAGAGACACTGTGACAGGCTCTGGCCAGGACTCCTCACACCTCATCCTGGTCACCTATGAGCGTAAAGTCACTACCAGCCGCAAAGTCAGCATCCCGGGGATTTTGGTTCCAGACATTGTGGCTTTTGACCCACGTGGCTCCACAGTTGCGGTGGCTTCCAACACCTGCAACATGGTGCTCGTGTATTGCATCACAGCCTCCGCCATGCCAAACATTCAGCAGATCTCTCTGCAGACAAACGAGAGGCCCAAAGGAGTCTGCTTCATCAATGACAAGACGCTGCTGTTGATGGTGGGCAGACAGAAGTCCAACGACCCTGCCTTCCTCCCATCTTCTAACACCGATAAATATAGTCTTCGTCTCGTAGCTAAAGAGCTGATGCTCGATGGAGAGACTCCAATCCCACCATCCCCCTCCGCTCACACCCATGAGTCTAATTTCTGCGCAGGGATTAGAAGGCACTCGGAGCAGCTGTCTAAGGATGAAAGGGAGCGCCCGGGGATTAGGGACTTGGTGTTACCTGGAGGGGCAGTTTTTCGTTCACCAAGCAACAGGCGTAAGCTGGTGGAGGAGGTGAGGAGCGGCGAGCCCAGCCCCGTCACCAGCTCTGTGGACTTCTCCGACCGAGCATCAGACAGAGCGGCGTCCAGCGCGTCCTCCATCACCGTGGAGAGTTTCGACATGGACCACGTCAACCGTATGACCAGCCTGGCGGTGGCCGGCCAGGCCAGCAGGGACTCCAGCCGGGCCAGCTCTCCTCGCCACGAGCCTTCGGACAAGCTCCACACAGACCCGACGCTGCCCATGCCCGAAAAGACCTCGGCCCCCGCCAAGGAGCGCGCACTGGAGCAGCTGGTTCACAACATGGAGAGGCTTTTTACGCGCTTTGCAGATGTACAGCAGTGCCTGACAGAAATCAAAGATTTTACCCAGAATGGCAGGAAGGCCCTGAGTGTCTACCCCAATGCCTGTGAACCCCCGTACGTCAATGTCACATGTCAGAAGCAGTTATCGGAAAATGTGTTCATTGACGAGCGGAGGCCGGTGTTGCTGTGTGATGGGAAGCTGTGTCTGCGGGCCCTCCAAGACCTCTTCAACCTAACCATTGTGGAGATGATGTATGGTCCATTGTGGATTGTACTCGTGGCAGATGCAGACGGCTTTGTGCCTCTGATGTTCAAGTCCCAAGAGGAACTTACGGTGCGGAACGGGAAGCGGAAAGCTACCCTCCGGACTCCGGAGAACTCCGTCCCATCCAGTCCAGCCCCCAGCCATGGCCCCATCACAACGACAGAGGCCTCATATAGTGCCTATTAACACACACCTCCATTTATGTACTCATGCAGTTATAACCCTCTTACTGAAATATATTTGAGTGGATCCAAGTATGCAGTGCAGAGTGAATGTGGCATGAACTTGTAGAGTCTCACTAATGCAGTTCTATGtcaaatttatttttctattaaaaaaacagtgagtTGAAAAGGGCTGCCTATTCAGATGTGATGTTTACATGTTGCTGCTTTGAAATGAAAGCTTTCCCGAAAGAAGTTTGAGCACcgagcaatgttttttttctttaattcccTTTTGACAAAATGCAGTGCAGTTGTGGAGGACACCACGTGTAGTGCCATAGCTTTCAGTATGTTTTAGAGATGtgtaagacatgttttcaatcGTTCTTCTGTCCTGATACAAGAACCGAGGCTTATGTATGATGTCAGTGTTTTATTTGGATCTGTATTTGTTATtactagagcactgcagaaaTCCCCACACTCAAAGGGGGGGAGTATGAAATTAAAATTTTACCCATAGAATCTCTGTTTTGGCACTTTCATGCTGAAAAGTCccactaaaatgaatgtgtaACACTCAAGTGTAATTTAACCTTTGTTATACAATGCTCTGGGTTATATAAAAATCATATATCATATAAAATGTTGAACTTCTCCTATATTTGTAATGTTACCAAGCTCAGTAACACAACTGACCACTAGAGGGGGCAAGACTCAACAGAAACTTTCCTGTCATTGCTACATACAGCAGTGATACTCAACTTGCTTCACAGGGCCAGTTAATATACAACTTGTGATGGCACCTGATATTAGCAACCTTGCATATAGCAATTAAACACAGTGGTTTAGGATTGGTATATGAAGTGGGAAAATAAAGGCAAATTCATCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249296 lncRNA upstream 718 13458602 ~ 13468087 (+) True G184085
TU249297 lncRNA upstream 7899 13458602 ~ 13460906 (+) False G184085
TU249284 lncRNA upstream 19706 13443043 ~ 13449099 (+) True G184078
TU249278 lncRNA upstream 34301 13434212 ~ 13434504 (+) True G184075
TU249277 lncRNA upstream 34599 13433985 ~ 13434206 (+) True G184074
TU249355 lncRNA downstream 415142 13889301 ~ 13890916 (+) True G184128
XR_005637034.1 lncRNA downstream 478226 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA downstream 482766 13956925 ~ 13988656 (+) False LOC120547176
TU249492 lncRNA downstream 895965 14370124 ~ 14370768 (+) True G184235
TU249501 lncRNA downstream 948168 14422327 ~ 14424853 (+) False LOC120546619
XM_039780950.1 mRNA upstream 37034 13421308 ~ 13431771 (+) True opn8b
XM_039780978.1 mRNA upstream 55993 13388815 ~ 13412812 (+) True opn8a
XM_039782214.1 mRNA upstream 219650 13229966 ~ 13249155 (+) True clic5b
XM_039782216.1 mRNA upstream 219650 13236578 ~ 13249155 (+) False clic5b
XM_039782217.1 mRNA upstream 240327 13221106 ~ 13228478 (+) True enpp5
XM_039780953.1 mRNA downstream 28485 13502644 ~ 13577416 (+) True atad2b
XM_039781329.1 mRNA downstream 396728 13870887 ~ 13875635 (+) True gzf1
XM_039782333.1 mRNA downstream 459674 13933833 ~ 13938559 (+) True chgb
XM_039782503.1 mRNA downstream 515322 13989481 ~ 13990079 (+) True LOC120547093
XM_039781909.1 mRNA downstream 550325 14024484 ~ 14139891 (+) False LOC120546742
TU249175 other upstream 221389 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 318727 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 460394 12990676 ~ 13008411 (+) True LOC120546167
XR_005637057.1 other upstream 2738023 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 2802333 10622736 ~ 10666472 (+) True G183540
XR_005636930.1 other downstream 550325 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 888182 14362341 ~ 14381187 (+) True G184231
TU249525 other downstream 1050977 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 1815515 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 1827766 15301925 ~ 15318836 (+) True G184458

Expression Profile