RNA id: TU249501


Basic Information

Item Value
RNA id TU249501
length 2527
lncRNA type sense_over
GC content 0.39
exon number 1
gene id LOC120546619
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14393440 ~ 14424864 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGATTTCTCGTTCATTGCCTTTTAACCTGCAAGTGTTTTACTGTCGCTCAGAAAGCGAGTGGTGTCGGAGTGTgtgttccttttttaaaacacaaagagTACCCGATTGCTTTCCTACACTGCAAACGCCCGTTTCTTCAACATTGGATAAGCGGTAAAAAGTTTTCAACACTCTAAAGCCATCTTTAACTCTTTCTCTATTTGAGCAGCATGACTCCTAacccaaaacaaaatcaaatccTGATAATTGGGTTTTGTATTTCTATTAACACCCAGATTCTTCAAAGAggtaatatatatattctccTACTTTACAATATCTCCTTATTAAGAATATTTTATTATGTCGATTTCCTAAGATGGCATATGCAATATATTTTTAGACTTAActatttttgaaaaaaggagggaaaaggaacttaacaaatcaaaaaaaaagaatactcgttctttttttaattttatttcagatTAGTTTGAAGTCATCACAGCGTTAATTGAGATTTGACCAAatgaaagaaagaggagaatGAAGGGACTTGATGCTGTCATATGACCTAAGGTTGTAGATAATAGGCAGTGAGAAACTCCCTTCTAGGCGATTTTTAATGAAGTGTACATATCTGAATCCAGGAAGCACCGGGCACTCTTTAAACAAGCAGACAGCTAATGCACAGTGTAGTATTTTTGCAAGATCTgtaataattatatttaaagtaagaacaaaatatttaaatggagtAAACAATACAATATATTAAGATTTCAATTTAACTTATTTGGAAATACTGTGTCTAATTGATTAACTATATCCTGTTTCTTTACACTCCAGGATAGAAATGCTTTCTGTTTATTTGTAACTTATAAGTTAGAAATGAAATGGTTGAGTGGCGGTTGTTGACAGAGATGTAAATGTTGTTTAGTTGCTATCATTTAGTTGTCAGGGGGTGGAGAGCAGACCAAAGCACACCCTGGCAGACAGGGAGAGCAGAAGTGGCCGCGGATCACAGTCAGATTTGATTCTCCTTTTGAGATACTAAAAGTCAAATCTGACCTGAGACCTGCGGGAAGAGACGACTTCTGGCTCTCCTGCCTAACCTGACTGACCTTAAGTGTGACGTTTGGGAGAATGCCATGGCAACATGGTCACCTGAGCTGTTATTGATTCGTCCTATTAGGGGAGAGACAGGCCGTACACCTGAGACAGGACGGGACGTCCTCTGGCCTCCAGGTAGAAAATCTCCTCAGGTCAGTTTCTCTTCTCTAACCCTAGCCCAAAAGTATAAAGGGTTTTCAGCAAGTGTCATAAATTAGGGACTGTATGAAAATTACTAGGGAGGACGGGTCACTGAGAAATTGTGCATTCTTCTTAAATATTTGGCTTAATTGACGATAGTCTATATTTGTTGGGAGAGCAGGGAGGgtgttattttttatctttttttacgTATAGTCTAAAGTGAAAATATTGCGTTGCTCAAATCGCCATTAACAGagagtgactgtatttccctacTTTATGTTCATATGTTATTGTAAGATCTTGAGGGGAGtttatacagttttttttgtaagttACAGGGAGGGCCTTgctttttaataaaacaaaacacaagattTACCTCCCCAACCTAATAATTTCCATACAGTCccttttttaaatcattaaaacTTCAAGGTTTTCCAGTGGGCTGAGAGGAAATTAAGGAATTTTCATATTATAGAGGAGTAGGTGAAGTTGAGGATTTGCTTAACAGCTTCTCCCACCATCCAAATCAGCTGGCCACCATTGCCTTTCTCAGACTTTCTCCTAGATGTGCATTGACGTTGTTTGTCCCCTAGAGGGCAGGAATCCAATGTGTGCGGAACAGTCTCATGGCCACATCCCATTCCTCTCCTTGTTCTCTTTCCTTGCATCCTATCTTTGGCTACTGAGAGTGATGCAGTAGCTTCGTGGAAAAGGAAATGAAGAAAGCTCAGTAAAGGAAGTTGCCATGAGTCATCCTCCCAAGTGCTGGCCAGCCCTGCAAAAAAAAGCATGGACTAGATTGtatgttattattttgtgactTTCCTAGCAGCTTTGCATGGACACAGTTGCATCCTTCGTTGCCATGAAAACAAGGCATGGCCAGCACTCGGGAAGAGTCCGTTTCCGTGTACGTATGGCTGTCCACAGTGGCAGGGGCCAAACACTGAGTGACCTGTACTGATGCCACACAGGAAGTGTGTTCACTCCATGAGTCAAAAAAACAGAAGCACCTGCCCAACCCATGAGATTCTGCTTTCTGTGTGGTCTGTATTGATGCTTATTGTCaacatatattttgatatatttggaaaaaataaCAGGGGATATACAGTAAAAAGTCTAGATATTTTTTGGAGTAGAGAAGCAATGTGTGTATCAGATTATTGTCACTTTGTCATGTTTTCTCTGAAAAGCTCTTGGATCTTTTGGAAGAATTATACAACATCCCTACTGATTTAATGTTCCATCGAAAGAATATTTATAAATTTTAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249492 lncRNA upstream 51559 14370124 ~ 14370768 (+) True G184235
XR_005637034.1 lncRNA upstream 433671 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA upstream 433671 13956925 ~ 13988656 (+) False LOC120547176
TU249355 lncRNA upstream 531411 13889301 ~ 13890916 (+) True G184128
TU249294 lncRNA upstream 948194 13468423 ~ 13474133 (+) False LOC120546706
TU249514 lncRNA downstream 51771 14476624 ~ 14565127 (+) True G184249
TU249531 lncRNA downstream 133689 14558542 ~ 14606665 (+) True G184263
TU249632 lncRNA downstream 230781 14655634 ~ 14656247 (+) True G184339
TU249634 lncRNA downstream 235466 14660319 ~ 14660735 (+) True G184341
TU249635 lncRNA downstream 235893 14660746 ~ 14661130 (+) True G184342
XM_039782364.1 mRNA upstream 86685 14329618 ~ 14335642 (+) False LOC120547018
XM_039781687.1 mRNA downstream 2711 14427564 ~ 14439516 (+) False LOC120546620
XM_039781688.1 mRNA downstream 2712 14427565 ~ 14439516 (+) False LOC120546620
XM_039781685.1 mRNA downstream 5550 14430403 ~ 14439516 (+) True LOC120546620
XM_039781686.1 mRNA downstream 5552 14430405 ~ 14439516 (+) False LOC120546620
XM_039782583.1 mRNA downstream 17340 14442193 ~ 14493620 (+) False evlb
TU249487 other upstream 41140 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 300813 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1174911 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1272249 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 1413916 12990676 ~ 13008411 (+) True LOC120546167
TU249525 other downstream 100283 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 864821 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 877072 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1235720 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 1270091 15694944 ~ 15716284 (+) False dpf3

Expression Profile