RNA id: XM_039781682.1


Basic Information

Item Value
RNA id XM_039781682.1
length 8362
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC120546619
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14393440 ~ 14424864 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCAGCGCAGAAGTAGGATGAGGATGTTCTTCTTGTTTTTGATGTTAtgtaaaacacatttgtttcttAAATAGTCTTGAAACGGGACCACTGGAGAGACTTTTGCTGAGGATTTCTTCACTTTGTATGGCAGGAGGGGGGGCCCAGCCCACCCCGTCTGTCAGCGctgcagtcagtcagtcatgTTGTGCTGCTAGTTGTTGTTCAGTAGCAACGCACCGACTGGTGCGCAAACTGAAGGCTGCGTACAGTGTTCATGCCAAGTGACGGATATAAGCGACGTGTGTGCGGGCTACGGACTCTGTCTCgatctccagcagcagcagcagcagcagcactcaaGGTTTTACAGCCGTGTTGGCCTCGGAAGAGTGGATGggatattaaagaaaaaaacatcctgAACAAACCCCGCTCGTCTCGGAAAAGAGTGTTCCCTCTTCTTGCGAGAATAGTTGTTTGCtccgtctcttctctcctctcgtCGATATCTGAAAGAGGTTCCCTCGAGTGGAGTGGCGAAACATGGGCGACGTTCGTGTTTATTTCCTCTAGTTGAGCTGCATCGGTTACCCGTGGGACGAGGCTGACCTGCCTTACCTAGCCATTTGAAAACAAGGTGCCATGACTGGCTCCTCGCACCATTGAAATTTAGACGAGATACTGCCCGCCACACACATACGTTACGGCCCCGCGGAGAAGCATGTGATGACTCACGCAAGGCAGAAGGGTTCCCTCAAGCAGAACGACGGCAGCGCTGAGTCGTGGGACAGCTGTCCTCTTTGGCCACATGGTGGCACTATGGGCGACGCCTGGCCTGAGCGCTCACTTCGATTCGGGAGGACAAAGAAGATAAGTGAGATCGTCAAACAAAGGAAAGTCATGGCCAAGAGGGCGAATGACAAAAGAGGGAGGACCGAAAAATCCGATCAGAACAGAAAACTTGACCGAAGGCGTGACAAGAAACGGCACAGGAAGTCCTATCCTTTGCGCGGTAGGGCTGGGAGTTCAGATGGGGAGGGACTCAGCTGTCATGTCCTCCTTACCCGATTGGAGGAAAGCATCCGTGAACAGGAGAGTTCTAAAGAACGGGTGCGAAAGGATGCACGCCGACATTTATCTCTCAAACCCAAACCCCAAAAAGGGAAAAGCAGTAAACGGAAAGAGGCTGAGTCATTACCAAAAACCAAATTAAAGTCAAACAGCGCAGGTCATGGTGAGTGTATTCATGTCCCACAACCTCGCAAGCGCAGACTGGCCTCTCTCAATGCTGAGGCAGTGAACAGTCTACTGCTTGAAAGGGCTACTGACCCTCAGGCGGCAGCTAAACAGGCCAGGAGACAGGAAGAGCCCACGAATGGAGGGATATCCCTGGATACAAATCCAACCAAGAGTGGTGTCCCTGGAGGTCTGAAGGCCACGCAAGGAAACATCAGTAAAGCCTCCAAATCTCACAAACTGTGCCAAAACTCAAAGCGGGTCAAGAAGGCCAAAGCCAACCGAGCAGAGAGCGGGGGGATGAGTCAGGAGAGTCTGGATGCCCCCGCCCCCAGAAGATTGGCTGGACTCAACGCTGCAGCCCTGCTGAAGTTAACCAGCGTGTCTGCTACCAGTAAACCGAGAGTAAAGGCTGCACCCGCAGCTACTGTCACATCAGACTGCAAGGCTCCTGCTGCTGTCTCCACCCCGAAACAGCACTCCAGGGTCAAACTCAAACACAAGGGGCAGTCACAAAAGCTGAAGGGGAAAAAGGTCCCTCCCCTGCACAGTGGCTGCACGGCCTGCAAGAAGAAGGCAGACTTTGAACCCAAAGTGGAGTGGGAGACAGGCAGCTGCACCCATCGACTGACCAAACCCGGCTACCAGTCCCGCAGCATGCTAGGGTACCCCTTAAAGCAAGTGAAGGAAGAGCAGCTGGAGACCGAACTGAGCCCATACTACTGCTGTCCCCCAGAGGGCTCAGTGGAATACTGCCACAGCCTGGCCTTCTTTCTGGGCCAGCAGCCCTACGGAGAATCGGACGATCAGCCACTTAACTCAGCCATGACCCCCGTGAAGCGCGAGTGCCTCGTAACCTCACCGTCCCTGACCCATTCCCACCCGCACACAGCTCTGACCCTCAGCCCGCACCCTTGCCTCTGCACGGCCGACCACTGCTTCTCCAGCTACTACGTTCACATCGCCCACCCGCCACACACTGGAACCACGTCAGCAAGCCTGGCCTCGCAACCTCTGAACTTTGCCCCCTCCAGTTTGTGCCCTAATCGGACGGCCGGCTCCAAGCTGCTGGGTCCACAGGTGTCCCACAGCTCGGGGATGGCCCACCCCGCCTACTGCAACTCGGTGGCTTCGCCCTGTTACAGTGACGCCTGCGGGATCAGCGGCTACACCTACAGAGCCATGCCTCCTGTCACCAGCAGGGGTTGTTCGTTCAGCACAGGATGCACTGGATGCACACACAGCATCAAAACAGAGGGTTACTCCTCCTCTCAGGGTGACCACAGCCCCTCCCTTCTGGTTCCCCCATCCCTGCCCATCTCCAGCTGCCCTCTCTCCAGCGTGCCCACTTCCACCCAGACTAAACCCCATCTGCTGACCCCCCTGTCGGGGCGAGACCAACCCCAGGCCCGGCTAAAGCTGGCCACGGAATGCCCACAGAGCAACGAACCCTCCAACGGCTTGCTGTCAATGGGCCGCACACGGCTGCCCCAGAAACAGCCGTCGCCCTTGCCAAGCCTCAGCAGCACCAAACAAAAGAGAGTCAGCCGCAGACGTGCCACCAACGGCTGGCGGCCTGTTGGAATGCCCACGGAGAGGGAGGTCTTTATTGCGGGAGAGGATGAAATGGCCCTGCGGCAGTGTTATGAAGGAGTGGAGAGGGACGGTGAAGTGATACATGTCAGAGACACTGTGCTGCTACGATCGGGCCCCAGGAAGAAATCCCTCCCATATGTTGCCAAGATATCATCGCTGTGGGAGGACCCCAAAACAGGAGAGCTGATGATGAGTCTTTTCTGGTACTACCGACCTGAGCACACACAGGGAGGCCGAGATCCCAGCACACACTGTGAGAATGAGATTTTCGCCTCTCGGCATCAGGATGAAAATAGTGTGGCCTGCATAGAAGACAGATGCTACGTTCTCCCACTAGCCCAGTACTGTAGattttgTGCCTTGGTGAAGCGGCGTGCCGAAGGCACCCCACCTGGCAGCGCCAGCATGGTGCCCTGCTGCCCCGACTTCGCCCCCCCTTCCCACCGCTGTGTGCCCACAGACGTCGACCCCGAGCTGGTGTATCTCTGCCGGCACGTCTACGACTTCCGCTTTGGACGCATCCTGAAGAACCTGCAGTAGAGGGTAGAAGAGGCGTCGCACCCATGAATTAATCATAACATAGCTGAACAGGACTGAACTGAACACCCCTGTCTTTTCTGCTGGGGACGGTCATGATCAGAGGGAAGGGGGACGGTGAGGTGGGGCTGGTTTTTGGAGAGGGACAGATGAAGCAAAAAGTGTTGGACACATTATGAAGCACAGATCCCTTTAGCTGACTACAGAGGGGTTCCAATGTGATGGATGCATTCATCTCAGTCAGAGCACCAATATCTCCTGGTTTGGAAGAGCGAGGATGGGAGAATTCATTCATCAGCTTGGATTTTTCCGCTTCCACAACTCTCTGAGGTTatatggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacccccccccaccccctcaccTGCCAGGAATGCTGAACACCAGGCTAAACTGGGCTACTGTCAGGACCGCGTTTCTCCGAAAGCATCTTAGCACAACAATCATGTTTGTTCCATTTGTAAGCCAATGACTCGGAATGGACCGGTGCTAAGGTGCTTCCGGGGGAACACAAGCCTGCCCCGTCAGCTCAATGTTAGCGGTGTTCAACCAGCCGGGGTGAAGGTGCAGCTAATTGAGAGTGTCGTCTTATTTCTCCTGATTTGAGTTCGtctcagttgtgtgtgtgtgtgttgtgtgtgcgcgcgtgtgtggaAGAGAGAGCAAGTGTTGTCAGTGTGGTTAAATGGATCAATGTTGGtatgtgtgatgtttttttttttttttttaggaggcTTTCAGGCAATCAAACCAAACAAGCAGCTTTAGAGGAAGCGGAGTTCTCTTCGCCCGTTCCTTTCTTTCTGTGTGACACAGCGCACTGACACTTACAGAAACATTTTCATCTCGAGTGATGCTTTGCGCAAACTAAAATACTGTACCTAAACGGGGTTTGTGAGAAAGATTTTTCCCCGCCAGAGCAGGGcttttttaaactctggtcaggACACTAAAAATGGCTCTAATAGTGAAAACACACACCTTTTCAAACTTTCATCTCAGCCTCAGTCCTGGCTTGAAGAAGCCTTGTTCTAGAGAGGCTCTTCTAACGGTCCAGTACAGAGAGCCCTTACTGAGGAGTTGAGAGACTCCTGAGCCCTGTGGAGGTTATCAAAACGAGGGACATCGGtcattgttttctgtttgtttttccgCATTATTTTTCACCTCCGCTGTTCCCTGTGACTTGCCTTATGACTTGCAGGTAGAGCTTTAGGCAGCTAGTCtcaccacatactgtacagctaGGAAGTGGTAGAACAGGTGTACTGTAATccccaaaaaaaagattgaCTGACAGCTTCGACATGGTCTCTGGACAATATGCACCGgttcagggctgcaactaatgattattttcattatcgttTAATCGTTTTGTCAATGAAGTGTCACAAAATAGTGAAATTGCCCTATATaatttcccacagcccaatgtgactcaaagatattcagttaacCAACTtgtatgacaaagaaaagcatcaaattcCTCACATTTAACAAGCCAGGACCAAGTAAATTTTTGGCACTGTTTGCTCAAGAAATGACTAAAATGATTATCCGATTACCAAAAgtagttgcagattaatttcCAGTCGATCGGCTGATCGATTAATCGACTCATCGTCGCAGCTCTAAACCGGTCAGAAACACAGTGCACTTCTCATGTCATCCATCTGCTGTGCTCCAGCTGCTCGATGTTTCTATTCTACCCATTCTAATTCTACATCCACACCAATTattttcctcctccctctcctcccccctgAAGATAAACCAAAGGATGTCACACAAGCCAGAGTCCCCCGTCTCCTCCCTCACACTTCCCCTCCTTGTCAGCACATCTGCCCTCGTCCCCCTTTATTATATTGCACTAATCCATTCCTTAATTACAACAACAAATGtgttcaacttttttttaagctaCAAATGTCTTACCTGggggaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctttcaCCAGTAGAGGAGTTGGCCAGCGTGTTTGTCATGTTACCTGATGCACATACAATCTGTTGAATCCCATggaagatatacagtatatactgtatatatatatatattactagtCATTCCATTTGGTTTTTTAATCAGCTCTGACAtacttatatacagtatatatacatgtatgtatgtatctatctatccacaCTGTTAATGTGATTTGATTTGAAAAAGGCATCTGGATGGAGGCCTGACGCGCTGTGTGGACAAACGTAGCACCATGTTAGACGTGTATTTGGATTGAAGGGGGAGGGTTTGTGGGTGGGTATGCGTGGGAGGGCGTTCAATACTTAATTGAGTCATGGTGGATTTCTCGTTCATTGCCTTTTAACCTGCAAGTGTTTTACTGTCGCTCAGAAAGCGAGTGGTGTCGGAGTGTgtgttccttttttaaaacacaaagagTACCCGATTGCTTTCCTACACTGCAAACGCCCGTTTCTTCAACATTGGATAAGCGGTAAAAAGTTTTCAACACTCTAAAGCCATCTTTAACTCTTTCTCTATTTGAGCAGCATGACTCCTAacccaaaacaaaatcaaatccTGATAATTGGGTTTTGTATTTCTATTAACACCCAGATTCTTCAAAGAggtaatatatatattctccTACTTTACAATATCTCCTTATTAAGAATATTTTATTATGTCGATTTCCTAAGATGGCATATGCAATATATTTTTAGACTTAActatttttgaaaaaaggagggaaaaggaacttaacaaatcaaaaaaaaagaatactcgttctttttttaattttatttcagatTAGTTTGAAGTCATCACAGCGTTAATTGAGATTTGACCAAatgaaagaaagaggagaatGAAGGGACTTGATGCTGTCATATGACCTAAGGTTGTAGATAATAGGCAGTGAGAAACTCCCTTCTAGGCGATTTTTAATGAAGTGTACATATCTGAATCCAGGAAGCACCGGGCACTCTTTAAACAAGCAGACAGCTAATGCACAGTGTAGTATTTTTGCAAGATCTgtaataattatatttaaagtaagaacaaaatatttaaatggagtAAACAATACAATATATTAAGATTTCAATTTAACTTATTTGGAAATACTGTGTCTAATTGATTAACTATATCCTGTTTCTTTACACTCCAGGATAGAAATGCTTTCTGTTTATTTGTAACTTATAAGTTAGAAATGAAATGGTTGAGTGGCGGTTGTTGACAGAGATGTAAATGTTGTTTAGTTGCTATCATTTAGTTGTCAGGGGGTGGAGAGCAGACCAAAGCACACCCTGGCAGACAGGGAGAGCAGAAGTGGCCGCGGATCACAGTCAGATTTGATTCTCCTTTTGAGATACTAAAAGTCAAATCTGACCTGAGACCTGCGGGAAGAGACGACTTCTGGCTCTCCTGCCTAACCTGACTGACCTTAAGTGTGACGTTTGGGAGAATGCCATGGCAACATGGTCACCTGAGCTGTTATTGATTCGTCCTATTAGGGGAGAGACAGGCCGTACACCTGAGACAGGACGGGACGTCCTCTGGCCTCCAGGTAGAAAATCTCCTCAGGTCAGTTTCTCTTCTCTAACCCTAGCCCAAAAGTATAAAGGGTTTTCAGCAAGTGTCATAAATTAGGGACTGTATGAAAATTACTAGGGAGGACGGGTCACTGAGAAATTGTGCATTCTTCTTAAATATTTGGCTTAATTGACGATAGTCTATATTTGTTGGGAGAGCAGGGAGGgtgttattttttatctttttttacgTATAGTCTAAAGTGAAAATATTGCGTTGCTCAAATCGCCATTAACAGagagtgactgtatttccctacTTTATGTTCATATGTTATTGTAAGATCTTGAGGGGAGtttatacagttttttttgtaagttACAGGGAGGGCCTTgctttttaataaaacaaaacacaagattTACCTCCCCAACCTAATAATTTCCATACAGTCccttttttaaatcattaaaacTTCAAGGTTTTCCAGTGGGCTGAGAGGAAATTAAGGAATTTTCATATTATAGAGGAGTAGGTGAAGTTGAGGATTTGCTTAACAGCTTCTCCCACCATCCAAATCAGCTGGCCACCATTGCCTTTCTCAGACTTTCTCCTAGATGTGCATTGACGTTGTTTGTCCCCTAGAGGGCAGGAATCCAATGTGTGCGGAACAGTCTCATGGCCACATCCCATTCCTCTCCTTGTTCTCTTTCCTTGCATCCTATCTTTGGCTACTGAGAGTGATGCAGTAGCTTCGTGGAAAAGGAAATGAAGAAAGCTCAGTAAAGGAAGTTGCCATGAGTCATCCTCCCAAGTGCTGGCCAGCCCTGCAAAAAAAAGCATGGACTAGATTGtatgttattattttgtgactTTCCTAGCAGCTTTGCATGGACACAGTTGCATCCTTCGTTGCCATGAAAACAAGGCATGGCCAGCACTCGGGAAGAGTCCGTTTCCGTGTACGTATGGCTGTCCACAGTGGCAGGGGCCAAACACTGAGTGACCTGTACTGATGCCACACAGGAAGTGTGTTCACTCCATGAGTCAAAAAAACAGAAGCACCTGCCCAACCCATGAGATTCTGCTTTCTGTGTGGTCTGTATTGATGCTTATTGTCaacatatattttgatatatttggaaaaaataaCAGGGGATATACAGTAAAAAGTCTAGATATTTTTTGGAGTAGAGAAGCAATGTGTGTATCAGATTATTGTCACTTTGTCATGTTTTCTCTGAAAAGCTCTTGGATCTTTTGGAAGAATTATACAACATCCCTACTGATTTAATGTTCCATCGAAAGAATATTTATAAATTTTAAGTCCTTtgtgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249492 lncRNA upstream 22672 14370124 ~ 14370768 (+) True G184235
XR_005637034.1 lncRNA upstream 404784 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA upstream 404784 13956925 ~ 13988656 (+) False LOC120547176
TU249355 lncRNA upstream 502524 13889301 ~ 13890916 (+) True G184128
TU249294 lncRNA upstream 919307 13468423 ~ 13474133 (+) False LOC120546706
TU249514 lncRNA downstream 51760 14476624 ~ 14565127 (+) True G184249
TU249531 lncRNA downstream 133678 14558542 ~ 14606665 (+) True G184263
TU249632 lncRNA downstream 230770 14655634 ~ 14656247 (+) True G184339
TU249634 lncRNA downstream 235455 14660319 ~ 14660735 (+) True G184341
TU249635 lncRNA downstream 235882 14660746 ~ 14661130 (+) True G184342
XM_039782364.1 mRNA upstream 57798 14329618 ~ 14335642 (+) False LOC120547018
XM_039782362.1 mRNA upstream 57798 14329618 ~ 14335642 (+) True LOC120547018
XM_039782365.1 mRNA upstream 57798 14329618 ~ 14335642 (+) False LOC120547018
XM_039782366.1 mRNA upstream 57798 14329618 ~ 14335642 (+) False LOC120547018
XM_039782361.1 mRNA upstream 57798 14331235 ~ 14335642 (+) False LOC120547018
XM_039781687.1 mRNA downstream 2700 14427564 ~ 14439516 (+) False LOC120546620
XM_039781688.1 mRNA downstream 2701 14427565 ~ 14439516 (+) False LOC120546620
XM_039781685.1 mRNA downstream 5539 14430403 ~ 14439516 (+) True LOC120546620
XM_039781686.1 mRNA downstream 5541 14430405 ~ 14439516 (+) False LOC120546620
XM_039782583.1 mRNA downstream 17329 14442193 ~ 14493620 (+) False evlb
TU249487 other upstream 12253 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 271926 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1146024 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1243362 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 1385029 12990676 ~ 13008411 (+) True LOC120546167
TU249525 other downstream 100272 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 864810 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 877061 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1235709 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 1270080 15694944 ~ 15716284 (+) False dpf3

Expression Profile