RNA id: TU249514


Basic Information

Item Value
RNA id TU249514
length 2223
lncRNA type read_through
GC content 0.47
exon number 2
gene id G184249
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14476624 ~ 14565127 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactttaggcACATGTTTGTCTATTTACAAAATGCTGACTGGCAAAAGGCCCTGGACACATTCTATATATGTGACATAAGCCAGTTATAATCATCAATTTTACATTATTGTAACAGCTGCATGAAATAATTTAGACAAACTGGATGTCTGTTAAGCTACACATCAGTATCAATGACACAGCTTAGAGGACTACCATGAATGATGCAAAACTGTTGAAAcctaattaaataaaagcaatgaGCAGTATGCTGATGTCTTTCAGTTTTAGATGAGTACACCTCGTCATGCACTGTTAAAAGTTTAAATATCCAGTCTTTGGGTTGAAATCAAGTTTTCTGATTCCGAGCCTGTGTTGtgctttcagtttaaaaaagttTTGTATATGTTCACCGATTCATGCCTTGGATTCAAATCTTTCAGGGTCTTGATTGCCAATGAGTTAAAGATTTCTGTGCACAGAGAGGCAGTTCCAGTGGAATAGATCTAGTCAGGCTCAGTATGGcagaacagggagctgtggctCTGGCCTTCCGTTAGACTGTGGGCCCCTAACACACCAAGCCACAGCTGGTGACTGTGCAGCACTTAAAAGTGTGTGAACGACCACCGCACGCAGTTTTTGCAGTGTGTCCTTCACTAATGGCACTAGTGTAGCACTAGGCTGTTTGGATGGATGATTAAGCTTGTTGAATCAGTGACGGAGGCAATTAGAGAGGAGGGCTGAGTGACCAAATCTATGATTTCAATGATTTAGTGTAGTTTCATCCGGTTTTTCACctcaagtttttatttttccacaAGATGAAGACCACTGGCAGATAACCCCAATTCACAATCTGAGCATTAGGAATGCTGAGTTATTTTCACAAATGCTGTGGCAAAGAAATGGTAGTGTAGTTTGCTTTGCTTCTCTTTCCACGAGGTTTCCTAGATTACAAAATACTGACTGCTGACTAAAATCTTACCTCTCACACAGGTGCAGAACATATGTGTGCACGTTGGCGGACAACTGGCCACCAGCTACAGCCTTACGATGAGTTCCAATGTGCTACTTTTAGAAGACATGAGGCAACAAAAACGTCTTTATCGGCACTAATTCTCTGAGGTCGgtttggtgtgtcagggccctGAGGCAGCCAAAATGTAGGCCACAGCACAGAttctgggggtgggggtgtattGTGGAGCCCTGGCCTTCCTTTCCCCAGCTCAGTCTAAAGGATTACTGCCTAGCACTAGTCTAGGTCTAATCTGCCTTTAGAAGGTCTGagcagctctctctctcgctctctctgtcttcctcctgAAGGCTGGCCTGCAGCCTAATGCAGATGCTGGTGTCACCACTGCACAGAGCCTGGAGGAAGAGGTCTGTGTGTTCTTTTAGGCGGTCTAGGTCGCTCTGAGTGCGCCGGTTCTGCCTGAGGAGCTCCTTGGTGCAGAGTGCAATGTGCAGCAGGCCAGATTGGCTAAGGATGTTGTAAGTGTTGCAGAAGCGCTTCCGCTTTGTATCAGCATCACTCTCACCGTGGTTACATTCTCCTGATGAGCTGTTCTCCTGGGTGACCGTCAGTGCAGGAGGGCCAGTGGTGTGAATAACAGACAGAGAGGTGGAAAACTCTGCCTGGCTGACAGCTGATGAAGGCCTCTCCCTGGCAGGACTGCTGCTGGCACTGGTTTCTGTTGTGGGAAGAGAGAGTCGGCTCTGGAGCAGAGGAGACGTGGCGCTGGGGGAGGCAGGAAGACTGAGAGTGGTTGAACCAGAGTTCCTAGCACCACCACACAGCTTTCTCTTCTGCTTCTCTTGCTGACAGCGTTCCCGGTGGTTGGAGGTCAAACTGCTACCTCTCTTTGACCCcgaagaagaggaagagtaagaagaagaagaagaaaaagaagaagaagaggagatgCTGGAGGAAGAAGATGAGGAGGCCGTTCCTCTCCCTGAGGAACTGGAGCTGTCTCCAGGATGTGGAGCAATCTTGGGGTAGGATTTCAGGATTGGAAGATACTTCTTAGTGCGTCTGTGTCTAGAGGAGGCCTCTTTGGAGGCAGGGGAGGCTTGACGAGAGACCACAGGCTGAAGGAAGACCACCTGAGGCTGCTGGACCACAGGTTGGACCACCTCCACCGTGGGACTAAACCCCCAGGTCTTTAGAGCAGGAGGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249501 lncRNA upstream 51771 14422327 ~ 14424853 (+) False LOC120546619
TU249492 lncRNA upstream 105856 14370124 ~ 14370768 (+) True G184235
XR_005637034.1 lncRNA upstream 487968 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA upstream 487968 13956925 ~ 13988656 (+) False LOC120547176
TU249355 lncRNA upstream 585708 13889301 ~ 13890916 (+) True G184128
TU249632 lncRNA downstream 90507 14655634 ~ 14656247 (+) True G184339
TU249634 lncRNA downstream 95192 14660319 ~ 14660735 (+) True G184341
TU249635 lncRNA downstream 95619 14660746 ~ 14661130 (+) True G184342
TU249636 lncRNA downstream 96967 14662094 ~ 14662481 (+) True G184343
TU249638 lncRNA downstream 102099 14667226 ~ 14667587 (+) True G184345
XM_039781687.1 mRNA upstream 37108 14427564 ~ 14439516 (+) False LOC120546620
XM_039781688.1 mRNA upstream 37108 14427565 ~ 14439516 (+) False LOC120546620
XM_039781685.1 mRNA upstream 37108 14430403 ~ 14439516 (+) True LOC120546620
XM_039781686.1 mRNA upstream 37108 14430405 ~ 14439516 (+) False LOC120546620
XM_039781682.1 mRNA upstream 51760 14393440 ~ 14424864 (+) True LOC120546619
XM_039782744.1 mRNA downstream 30034 14595161 ~ 14602820 (+) False LOC120547239
XM_039782743.1 mRNA downstream 30037 14595164 ~ 14602820 (+) True LOC120547239
XM_039782742.1 mRNA downstream 30040 14595167 ~ 14602820 (+) False LOC120547239
XM_039780905.1 mRNA downstream 63986 14629113 ~ 14634460 (+) False LOC120546154
XM_039780903.1 mRNA downstream 64978 14630105 ~ 14634460 (+) False LOC120546154
TU249487 other upstream 95437 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 355110 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1229208 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1326546 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 1468213 12990676 ~ 13008411 (+) True LOC120546167
XR_005636833.1 other downstream 724547 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 736798 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1095446 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 1129817 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 1129817 15694944 ~ 15716284 (+) False dpf3

Expression Profile