RNA id: TU249632


Basic Information

Item Value
RNA id TU249632
length 588
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G184339
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14655634 ~ 14656247 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAActttttaacagtttattgACATGTGTATAGCGATTGTCTGTGCAGCGGACGATTACAGAAGAATATGatataaaataatacaaaatagcTGTACATAACACCTATGTATTAAAAGGAATGCATTATTAACTGTGAGGTTTTACGCTGTATATTACGTGTCAGCTACTCACTCACCTACAGTAAGATGAGTTCATAAGTTGAGGAGGTTGAGGTTTTGCCATCTGAAGTGAAGGtcaagcataaaaaaaaaaagaaagttagggAACTGCTAATGATGTTACTGGCGGTTTCTAACTATCTAAAATACTGTTATCTAAAAATTCACAGAtattaaaatctaaaaaaaacaagggaGAGGAAATTGCATATGGACACCTATAACCCAAAGAGAGTTCAAATGAAGAATAAAACAAaggaaaagtgaagaaaaattaggtaaaataaatatatcaGGTTAGAAACTAAAAGCCAATGAGGGTGCTGCAGCGGTTCTTCCATCCACATGCCAATGGTGTTACACTAATTGTTGTATATATTCAAAAGCAAGATTTGCAGGATTTGGCGAGCTGATCGAAGATGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249531 lncRNA upstream 48969 14558542 ~ 14606665 (+) True G184263
TU249514 lncRNA upstream 90507 14476624 ~ 14565127 (+) True G184249
TU249501 lncRNA upstream 230781 14422327 ~ 14424853 (+) False LOC120546619
TU249492 lncRNA upstream 284866 14370124 ~ 14370768 (+) True G184235
XR_005637034.1 lncRNA upstream 666978 13952385 ~ 13988656 (+) True LOC120547176
TU249634 lncRNA downstream 4072 14660319 ~ 14660735 (+) True G184341
TU249635 lncRNA downstream 4499 14660746 ~ 14661130 (+) True G184342
TU249636 lncRNA downstream 5847 14662094 ~ 14662481 (+) True G184343
TU249638 lncRNA downstream 10979 14667226 ~ 14667587 (+) True G184345
TU249714 lncRNA downstream 453387 15109634 ~ 15110077 (+) True G184390
XM_039780905.1 mRNA upstream 21174 14629113 ~ 14634460 (+) False LOC120546154
XM_039780903.1 mRNA upstream 21174 14630105 ~ 14634460 (+) False LOC120546154
XM_039780902.1 mRNA upstream 21174 14631550 ~ 14634460 (+) True LOC120546154
XM_039782744.1 mRNA upstream 52814 14595161 ~ 14602820 (+) False LOC120547239
XM_039782743.1 mRNA upstream 52814 14595164 ~ 14602820 (+) True LOC120547239
XM_039782853.1 mRNA downstream 25994 14682241 ~ 14699493 (+) False prpf39
XM_039782852.1 mRNA downstream 25995 14682242 ~ 14699493 (+) True prpf39
XM_039782857.1 mRNA downstream 43719 14699966 ~ 14702153 (+) True faua
XM_039781334.1 mRNA downstream 282671 14938918 ~ 14954916 (+) True LOC120546410
XM_039782494.1 mRNA downstream 456923 15113170 ~ 15116784 (+) True mgat2
TU249525 other upstream 126264 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 274447 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 534120 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1408218 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1505556 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 633427 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 645678 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1004326 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 1038697 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 1038697 15694944 ~ 15716284 (+) False dpf3

Expression Profile