RNA id: TU249638


Basic Information

Item Value
RNA id TU249638
length 362
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G184345
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14667226 ~ 14667587 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAATTTTACTATCAGGTTTTAAGAGACTTACCCCAAAATGACCAATTCGCCGTATTTTACCGGGTCTTTAACGGGCACATCATCATCGCCGTCTTTTTTCGGTGAATTCATCAGACTGGACTGctccagaagaaaaaaaaacgcgtCCAATGGCAATAATGGTGAGATAAAACAATGCTAACACACTCGAAACTGAAGGGAAGTGATTTGGGTTGTAGCCTATCAAAGTTTGGGCACAGTTGGGCAAAGTTTTTCCAGACTTCtcgttgtttgttttattgttttaatccCGTAAAGGCGCATCTTTTCGTGGCTTTAATGCTAGTGTGTAGCTAGTATCGCAACATATCTGTTCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249636 lncRNA upstream 4745 14662094 ~ 14662481 (+) True G184343
TU249635 lncRNA upstream 6096 14660746 ~ 14661130 (+) True G184342
TU249634 lncRNA upstream 6491 14660319 ~ 14660735 (+) True G184341
TU249632 lncRNA upstream 10979 14655634 ~ 14656247 (+) True G184339
TU249531 lncRNA upstream 60561 14558542 ~ 14606665 (+) True G184263
TU249714 lncRNA downstream 442047 15109634 ~ 15110077 (+) True G184390
TU249710 lncRNA downstream 442656 15110243 ~ 15111605 (+) False G184389
TU249711 lncRNA downstream 442656 15110243 ~ 15111605 (+) True G184389
TU249709 lncRNA downstream 461889 15129476 ~ 15131771 (+) False hsp90aa1.1
TU249755 lncRNA downstream 506103 15173690 ~ 15174130 (+) True G184419
XM_039780905.1 mRNA upstream 32766 14629113 ~ 14634460 (+) False LOC120546154
XM_039780903.1 mRNA upstream 32766 14630105 ~ 14634460 (+) False LOC120546154
XM_039780902.1 mRNA upstream 32766 14631550 ~ 14634460 (+) True LOC120546154
XM_039782743.1 mRNA upstream 64406 14595164 ~ 14602820 (+) True LOC120547239
XM_039782853.1 mRNA downstream 14654 14682241 ~ 14699493 (+) False prpf39
XM_039782852.1 mRNA downstream 14655 14682242 ~ 14699493 (+) True prpf39
XM_039782857.1 mRNA downstream 32379 14699966 ~ 14702153 (+) True faua
XM_039781334.1 mRNA downstream 271331 14938918 ~ 14954916 (+) True LOC120546410
XM_039782494.1 mRNA downstream 445583 15113170 ~ 15116784 (+) True mgat2
TU249525 other upstream 137856 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 286039 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 545712 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1419810 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1517148 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 622087 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 634338 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 992986 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 1027357 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 1027357 15694944 ~ 15716284 (+) False dpf3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU385091 True 345 lncRNA 0.33 2 CI01000120 1111899 ~ 1112676 (+)
rainbow trout (Oncorhynchus mykiss) TU385091 False 511 lncRNA 0.43 1 NC_048568.1 29913722 ~ 29914232 (+)