RNA id: TU249709


Basic Information

Item Value
RNA id TU249709
length 1345
lncRNA type sense_over
GC content 0.43
exon number 2
gene id hsp90aa1.1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15129476 ~ 15134860 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGACAGTCAGCTTTTAGTAGTGTCTGCCATAAAGATGCAAACATTTGGATTACATAACAGATCTGCAAGTGTAATACACTGCCATCCTCTGGTCAGCTGAAGTCATTAACACCCACACTGAACCAGAGAATTCTGTTCTGTTTTACACCAGCTTGTATTAACTATGTAGTCCCACATTTGAAAGCCTCTGTGTACGAGTTGTTGATGGTATATTGCAAGGTTTAATttttttgagctgctgtaacaaGGGAATtcccccagtgtgggattaataaagtctatcttatcttctTTTATCTCATGAGGGGTGAGGGCAGACAAACTACAGTATGCAAGAGAGCCTGCACCTTTTTCCCTTCtttcccttctttctctcttttcccttcTCTTTTTGCAATTGTGCCAAAAAACTCTGAAACATCGTCATTTTCGAGTAAGATGGCAGTCTGTTTGCAAAGTCCATCCGGTGATAAAGGCCACAGTACGTGGCTGAAAGCTctaaacattttgtttgtgaaCCTTGTGCTAAGAATTTTTTGTCAAACAGCTCAaatttattcatattaattatgttttaaaatatgACATAAACTCATGTACACCCCTAATCTTGCAcgccaaaaaaagaaatgggcCTGCTGTCTATAggaatcgtgtgtgtgtgtgtgtggccatccCTGACAGCAGCTGATAGCAGAAGCACTGCACAGCTGTGATGCTTACAGGGGGGGGCTAAGAGCCAGACAAGCTATCAGGAAAACTCTCAGTGTGAGTGACAGGCACTCCTTGTGACTGTGGAGCCCTATAAGGGCACATCAACTTTAGGGTTCTGGTGTCGCAATCGCCATCCCCCCCTTCTAGGCCTTTCTTCAACACCCCCCTTAATGTAGCTATAGTATCTTCTGGACGCTTCTGAATGGGAGCTTCCAGAAACCACCCCTTAAGTATAAAAAGACACCAGCATGTCGTGGGGTCTGCATAGAGTCACTTGAACACACCAAGAGAGATTTACTGCCCACGGGAGCCGCAGCGAAGCACACATTTGGAACTCCTCAAGAAGAGAAAGACCAGCTCAGTGGTAAATTTGACTATCCTCAAGAAGCGACTGTAGGAAAAGATTCTATTCAAGATGCCTGCCGCTGGAAACGTTATGGAGGAGGAGGCTGAGACCTTTGCCTTCCAGGCTGAGATTGCTCAGCTTATGTCCCTGATCATCAACACCTTCTACTCAAACAAAGAGATCTTCCTTAGGGAGCTCATCTccaactcttcagatgtaagtAAAATCAGCACTTTATCATACAAGttcctttgttgttgttttttaaatgtttaaatgaaaGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249710 lncRNA upstream 17871 15110243 ~ 15111605 (+) False G184389
TU249711 lncRNA upstream 17871 15110243 ~ 15111605 (+) True G184389
TU249714 lncRNA upstream 19399 15109634 ~ 15110077 (+) True G184390
TU249638 lncRNA upstream 461889 14667226 ~ 14667587 (+) True G184345
TU249636 lncRNA upstream 466995 14662094 ~ 14662481 (+) True G184343
TU249755 lncRNA downstream 41919 15173690 ~ 15174130 (+) True G184419
TU249768 lncRNA downstream 70535 15202306 ~ 15202515 (+) True G184431
XR_005637012.1 lncRNA downstream 125362 15257133 ~ 15264717 (+) True LOC120547009
TU249801 lncRNA downstream 188247 15320018 ~ 15320239 (+) True G184461
TU249803 lncRNA downstream 189975 15321746 ~ 15322122 (+) True G184463
XM_039782494.1 mRNA upstream 12692 15113170 ~ 15116784 (+) True mgat2
XM_039781334.1 mRNA upstream 174560 14938918 ~ 14954916 (+) True LOC120546410
XM_039782857.1 mRNA upstream 427323 14699966 ~ 14702153 (+) True faua
XM_039782853.1 mRNA upstream 429983 14682241 ~ 14699493 (+) False prpf39
XM_039782852.1 mRNA upstream 429983 14682242 ~ 14699493 (+) True prpf39
XM_039782224.1 mRNA downstream 3596 15135367 ~ 15141393 (+) True hsp90aa1.2
XM_039782230.1 mRNA downstream 10932 15142703 ~ 15173582 (+) True ppp2r5cb
XM_039782231.1 mRNA downstream 10932 15142703 ~ 15173582 (+) False ppp2r5cb
XM_039782232.1 mRNA downstream 20629 15152400 ~ 15173582 (+) False ppp2r5cb
XM_039782031.1 mRNA downstream 145814 15277585 ~ 15286851 (+) True slc25a29
TU249525 other upstream 600106 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 748289 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 1007962 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1882060 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1979398 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 157903 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 170154 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 528802 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 563173 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 563173 15694944 ~ 15716284 (+) False dpf3

Expression Profile