RNA id: XM_039782225.1


Basic Information

Item Value
RNA id XM_039782225.1
length 2522
RNA type mRNA
GC content 0.49
exon number 11
gene id hsp90aa1.1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15129476 ~ 15134860 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCCATCCCCCCCTTCTAGGCCTTTCTTCAACACCCCCCTTAATGTAGCTATAGTATCTTCTGGACGCTTCTGAATGGGAGCTTCCAGAAACCACCCCTTAAGTATAAAAAGACACCAGCATGTCGTGGGGTCTGCATAGAGTCACTTGAACACACCAAGAGAGATTTACTGCCCACGGGAGCCGCAGCGAAGCACACATTTGGAACTCCTCAAGAAGAGAAAGACCAGCTCAGTGGTAAATTTGACTATCCTCAAGAAGCGACTGTAGGAAAAGATTCTATTCAAGATGCCTGCCGCTGGAAACGTTATGGAGGAGGAGGCTGAGACCTTTGCCTTCCAGGCTGAGATTGCTCAGCTTATGTCCCTGATCATCAACACCTTCTACTCAAACAAAGAGATCTTCCTTAGGGAGCTCATCTccaactcttcagatgtaagtAAAATCAGCACTTTATCATACAAGttcctttCCTTGATTTGCAAAAGCCGAAACGAAGTCTGAGTTGAATTGGTACTCGGCATGACCAAGGCTGATCTGATCAACAATCTGGGCACAATCGCCAAGTCTGGCACCAAGGCTTTCATGGAGGCTCTGCAGGCTGGAGCCGACATCTCCATGATCGGTCAGTTTGGTGTGGGTTTCTACTCTGCCTACCTCGTGGCTGAGAAGGTGACAGTCATAACCAAGCACAATGATGACGAGCAGTACATTTGGGAGTCTGCAGCCGGAGGCTCTTTCACAGTCAAACCTGACACCGGAGAGTCCATTGGCAGAGGCACACGTGTAATCCTTCACCTCAAAGAAGATCAGACCGAATACTGTGAGGAGAAGCGCGTCAAGGAAGTTGTGAAGAAGCACTCACAGTTCATTGGCTACCCTATTACACTTTATGTGGAGAAGACAAGGGAGAAGGAAGTGGAATATGAACAGGgagaaaaggaagaggaagttGATAAAGATGCTGCTGAGAAGGACAAACCTAAGATTGAGGACGTGGGCTCCGACGAGGACGAGGACACAAAGGATGGCAAGaacaagaggaagaagaaggtcAAGGAAAAGTACATTGATGCCCAGGAGCTGAACAAAACCAAGCCAATCTGGACCCGTAACCCTGACGACATCACCAATGAGGAGTATGGAGAGTTCTACAAGAGTCTCACCAACGACTGGGAGGACCACCTGGCTGTCAAGCATTTCTCAGTGGAAGGTCAGCTGGAGTTCCGTGCCTTGCTCTTCGTACCCAGAAGGGCTTCATTCGACCTCTttgagaacaagaagaagaagaacaacatCAAGCTGTACGTGCGCAGGGTCTTCATCATGGACAACTGCGATGAGCTCATCCCCGAGTACCTCAaTTTCATCAAGGGTGTGGTGGACTCTGAGGATCTGCCCCTGAACATCTCCAGAGAGATGCTGCAGCAGAGCAAGATCCTGAAAGTCATCCGCAAAAACCTGGTCAAGAAGTGCCTGGATCTCTTCACCGAACTCGCCGAGGACAAGGACAACTACAAAAAGTGCTATGAGCAGTTCTCCAAGAACATCAAGCTCGGCATCCATGAAGACTCTCAGAACAGGAAGAAGCTGTCTGAGCTGCTGCGCTACTACACTTCATCCTCTGGAGATGAGATGGTGTCCCTGAAAGAGTATGTGGGACGCATGAAGGACAACCAGAAACACATCTACTACATCACAGGTGAGACCAAAGACCAGGTGGCGAACTCTGCCTTCGTGGAGCGCCTTCGCAAAGCCGGCCTTGAGGTCATCTACATGATCGAGCCCATCGATGAGTACTGTGTCCAGCAGCTGAAGGAGTATGATGGCAAGAACCTGGTCTCAGTGACCAAGGAAGGCCTGGAGCTGCCCGAGGATGAGGACGAGCTGAAGAAGCAGGAGGAGCTCAAAAAtaaatttgaaaacatttgcaAGATCATGAAGGACATCCTCGACAAGAAGATTGAGAAGGTCTCAGTCTCCAATCGCCTGGTCTCTTCCCCCTGCTGCATCGTCACCAGCACCTACGGCTGGACGGCCAACATGGAGAGGATCATGAAGTCCCAGGCCCTGAGAGATAACTCCACTATGGGCTACATGACAGCTAAGAAGCACCTTGAGATCAACCCTCTGCATCCAATCATTGAGACCTTGAGGGTGAAGGCAGAGGCTGACAAGAACGATAAGGCAGTGAAGGACCTGGTCATCCTCCTCTTCGAGACTGCCCTGCTGTCTTCAGGATTCACACTGGAGGACCCCCAGACACATGCCAATCGCATTTACAGAATGATCAAGCTTGGTCTCGgcattgatgatgatgattctgCAGTTGAGGACCTCATTCAGCCTGCTGATGAAGATATGCCAGTCTTGGAAGGAGATGATGACACATCAAGAATGGAGGAAGTTGACTAAAATACTTAGAAAAGTCTTTCCTgcttatttgattatttttgtaATTATATTGCTTTCTTAGACATGTCACTCTAACACAACTCTCATTTCTGAAACAGTATTAACTA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249710 lncRNA upstream 18712 15110243 ~ 15111605 (+) False G184389
TU249711 lncRNA upstream 18712 15110243 ~ 15111605 (+) True G184389
TU249714 lncRNA upstream 20240 15109634 ~ 15110077 (+) True G184390
TU249638 lncRNA upstream 462730 14667226 ~ 14667587 (+) True G184345
TU249636 lncRNA upstream 467836 14662094 ~ 14662481 (+) True G184343
TU249755 lncRNA downstream 38830 15173690 ~ 15174130 (+) True G184419
TU249768 lncRNA downstream 67446 15202306 ~ 15202515 (+) True G184431
XR_005637012.1 lncRNA downstream 122273 15257133 ~ 15264717 (+) True LOC120547009
TU249801 lncRNA downstream 185158 15320018 ~ 15320239 (+) True G184461
TU249803 lncRNA downstream 186886 15321746 ~ 15322122 (+) True G184463
XM_039782494.1 mRNA upstream 13533 15113170 ~ 15116784 (+) True mgat2
XM_039781334.1 mRNA upstream 175401 14938918 ~ 14954916 (+) True LOC120546410
XM_039782857.1 mRNA upstream 428164 14699966 ~ 14702153 (+) True faua
XM_039782853.1 mRNA upstream 430824 14682241 ~ 14699493 (+) False prpf39
XM_039782852.1 mRNA upstream 430824 14682242 ~ 14699493 (+) True prpf39
XM_039782224.1 mRNA downstream 507 15135367 ~ 15141393 (+) True hsp90aa1.2
XM_039782230.1 mRNA downstream 7843 15142703 ~ 15173582 (+) True ppp2r5cb
XM_039782231.1 mRNA downstream 7843 15142703 ~ 15173582 (+) False ppp2r5cb
XM_039782232.1 mRNA downstream 17540 15152400 ~ 15173582 (+) False ppp2r5cb
XM_039782031.1 mRNA downstream 142725 15277585 ~ 15286851 (+) True slc25a29
TU249525 other upstream 600947 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 749130 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 1008803 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1882901 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1980239 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 154814 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 167065 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 525713 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 560084 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 560084 15694944 ~ 15716284 (+) False dpf3

Expression Profile