RNA id: TU249854



Basic Information


Item Value
RNA id TU249854
length 816
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G184508
representative True

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15678997 ~ 15680159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTCTTATTCACCATGTAAATAGCTTCATTGATGACAATGTCCTTGATCTTGCTCATCTCAATGAATGTGGTGGTCTCGCGGCCTGAGGCGTAGCTGGAGGACACTTGTATGCCTAAGGAGCCAATGACAAGCAGGGACTCGTGGTCTACCTTCACAAAGTGGATGTGAAGCATCATGCCAACCAGGGTGATGAATATAGCGCTGGACAGAACAGCGGTGTTCTGCAAGAGAGGGaagacatCTCTGTGAGGAAGAACACAGCGTACGCCAAAAGCCAAACGCAGCAGGTGTACACCATCACCTTGCCGATGGACACTTTGGGGACGCTGACAATGAACTCGCTGCAAAGGCTAGAGTGACTCTGACAGTGCAGAGATATGCTTTTGCCATTAATGTCGGTGAAGGCTTCATCTTCCATCATGAACCCAACAAATACCGGGAGAGTAACGTGAGAGGAAGAGCGAACTCGCAGAAACAGTTAGcttagccagctagctaacaccaaagaacttctaatataccgtagaccggctttgctaACACTGAAGGTTAGCACTGAATTAGCTTTGGCTATCTGTAAACAGGCAAGGTCAGTCGCATTCAAAATCATGAAGTAGTCCTTTCTTAGACGGAAAATGATACATgcatacttacatacatacataaagttACATACATACGATGCTAAGTCTCTCCAGTTAAATATaagaaaaaaagtgaggcaaaagaaaaatactgaataCTCGCAACTGAATTGATGTCACAATCAATTCTCACATTAGATGCACTCGTTACTTACACCGGGTTGTTCGGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU249855 lncRNA upstream 23477 15654846 ~ 15655520 (+) True G184509
TU249823 lncRNA upstream 185470 15493204 ~ 15493527 (+) True G184481
TU249814 lncRNA upstream 199917 15478491 ~ 15479080 (+) True G184474
TU249805 lncRNA upstream 356109 15322575 ~ 15322888 (+) True G184465
TU249803 lncRNA upstream 356875 15321746 ~ 15322122 (+) True G184463
TU249871 lncRNA downstream 97070 15777229 ~ 15780546 (+) True G184521
TU249880 lncRNA downstream 117656 15797815 ~ 15798794 (+) True G184526
TU249922 lncRNA downstream 209206 15889365 ~ 15889585 (+) True G184561
XR_005636843.1 lncRNA downstream 234427 15914586 ~ 15920914 (+) False LOC120546249
TU249891 lncRNA downstream 234486 15914645 ~ 15921798 (+) True LOC120546249
XM_039782916.1 mRNA upstream 15336 15660670 ~ 15663661 (+) False rhov
XM_039782709.1 mRNA upstream 74831 15602335 ~ 15604166 (+) True chac1
XM_039782510.1 mRNA upstream 81104 15588083 ~ 15597893 (+) True dll4
XM_039780969.1 mRNA upstream 378290 15296281 ~ 15300707 (+) True vrtn
XM_039780970.1 mRNA upstream 378290 15296616 ~ 15300707 (+) False vrtn
XM_039781221.1 mRNA downstream 302 15680461 ~ 15687727 (+) True zfyve1
XM_039781224.1 mRNA downstream 14785 15694944 ~ 15719632 (+) True dpf3
XM_039781225.1 mRNA downstream 14785 15694944 ~ 15719632 (+) False dpf3
XM_039781226.1 mRNA downstream 22877 15703036 ~ 15719632 (+) False dpf3
XM_039782619.1 mRNA downstream 49888 15730047 ~ 15738980 (+) True stx7l
TU249859 other upstream 15423 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 360161 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 385745 15289674 ~ 15293252 (+) False LOC120546207
TU249525 other upstream 1149627 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 1297810 14362341 ~ 14381187 (+) True G184231
XR_005636865.1 other downstream 14785 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 14785 15694944 ~ 15716284 (+) False dpf3
TU249895 other downstream 234486 15914645 ~ 15968123 (+) False LOC120546249
TU250012 other downstream 719279 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 1085386 16765545 ~ 16776601 (+) False si:ch211-57i17.1

Expression Profile