RNA id: TU249859


Basic Information

Item Value
RNA id TU249859
length 2336
RNA type TUCP
GC content 0.45
exon number 3
gene id rhov
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15660573 ~ 15663661 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttctttcttttcttggtGGGTGTGTCTATGCAAATCACAACCTGTAGCACAAACTTCCTCTAAAAACGTGCCCGGCCCCACACATGTCGCCCGTCAGTCAGAACAGGATAGGCAGCCTGCTGGTATGTGACAGACTCTACCAAGCTGACTCTCAGTAGTCTCTCAGTCAGAGATCAGTAAGGAGGCGAGTCTGCATTCACAAGTTTTATGTTCGGCTCGACATGCCACCTCGAATGGATTACTTTTACCACGAATCCCGAGTCCCTTCCAATTGCGGGCTGACCCGGGAAGATGAGCTGGAGCCCGGGGTCATCAGCTGTATGCTGGTCGGAGACGGAGCCGTCGGGAAGACCAGCATGATTGTCAGCTACACCTCCAATGGATACCCGACAGAATACCAACAGACCGGCTTTGATGTCTTCTCTGGTCAGGTCCAAGTAGAAGGATCTCCAGTTAAAGTTCAGCTTCTGGACACTGCTGGACAGAGTTTGATGGATTCAGAGCTCTGTCCTATGCCCACACGGACGTCTTCATCCTGTGCTTCAGCATGGTCAACCCCACCTCGTTTCACAACATAACCAAGAAGTGGGTTCCCGAGATCCGGGCTCATAATCCGTCCTCGCCCATCATTCTTGTTGGGACTCAGTCGGACCTCTTGTTGGACGTGAACGTTCTCATCAACCTGGACAGATCTAATGTCAAACCTATTCTTAGCTCCCGGGCCCGGAGCATGGCGGAGAAGATCAGGGCTACAGACTATGTAGAGTGTTCGTCACTCACGCAAAAGAACTTGAAGGAGGCGTTTGATGCGGCCATCTTTGCtgccattaaaaacaaaacccgCAAGACTAAGAAGAGGAGGTTTTCTGACAGACGCACTAAAGCTTTCTCAAGGTGCAGCTGGAAGAAGTTCTTCTGCTTCATCTGAACTCATAAACAGACTGCTAACCCTGTGGGTTGTGGACTAaacttacatttattttaataatttgctTTTGTTGTCACAGTTCTGATCTGTGGCAGTTTAGCATCCTTCCCTGTTAAGTATTTGGCTCATTTTACTCTGGGATGCCAAATGGTGCAAGGGGAAACCAAACAGCTCAGTGAACATTGGGAACTAACCCCTGTGGAGGCAGCAGAGAGGATTCTGGGTCTTATTTCACACTCCAGCAGACAGAGTGTTGTTTACATTAAATTCAAATGTTTGATTGTTACAGGGTGATAGAAAACAACCTATGTGGCATATTaaatcaaagtgtgtgtgtatgctttaATGTGTATGCATCCCTGGCGAGCCACTTGAGAGAAGAAGGGCAGTGTATTGAGACTTTAAAGGAACATATCAATGTACAGTCACAGAGAGAAAGCCCAGGCCATCATGTAAATGTTGTGGATTTGCATGCTGAGCTTTGCTACCAGCTGCAGCCTTTAATGTAGacgagagagaaacagaaagtgTCCGGGGCTGTGTTTAAACTGATGGGCGTTAGCCACTTCTCTGTTGTATTCTTGCTGTCTGGCTACACCAGCCTATTTATATGCGACAGCTGCGAGTTCAGATTGCAGTGCGAGGTGCCACATTCTTACCTGTGTGTGAAAGCTCCCCTGGCTGCTTTGGGCTGGTTTTTTCTCACCTTTCAAGCTAATCGACTGAACATCGTATCGCCCCTGACATTTCTCTTTAATTGGAATTGTATCAACCGATTTAACATCTATGGAAACACAGCAGGATGAGAGTTGTGACAAATCAGAAACAAATGCATGTCTTAATTCTAGGATTGGCACAGGAACTTTCTGAAAATTCTCTTGTCTGAGGTGAAAGGTTGCATGGGAGCGGTACCCTTTGgctttttgtctctgtctcccttTAATCTGCATCTGAAAGCAAGCACTGCAGGGGTCTTAGCTTCCTCCCTGCGGATCCTCCCACCACCACCGTCAGCCTGGCTTTTTTAATTTACCCCTCTTTGTTTACATGCTCAATACACTCCTTATCTCCTCAAAAGCCTATAGTGTGTACAGAGTTAGAGGACGCTAAACAGCCTCTGCTTGAATGTAAGTGTAAGGTAATACACTTTTTCAAAGCCTTGTGTCTGTGATGTATGTGCTAAAGAAAATCTGATTTAGATTTTGCACTCCTGTGTGGCGATATCTGATGGATATACGAGTGACCAGAGCCAGGGATAGGCTTCACTATACTTCTTGTGGAAGTTTGCTTAATATATATGCTATTCTGTTTGTTAAAACAGGTCATTTGTCAAATGTATATGAAATATTAGACAAGACATGGATTTTAAATGCATTAATATACTCCACATatgttttgttacattttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249855 lncRNA upstream 5053 15654846 ~ 15655520 (+) True G184509
TU249823 lncRNA upstream 167046 15493204 ~ 15493527 (+) True G184481
TU249814 lncRNA upstream 181493 15478491 ~ 15479080 (+) True G184474
TU249805 lncRNA upstream 337685 15322575 ~ 15322888 (+) True G184465
TU249803 lncRNA upstream 338451 15321746 ~ 15322122 (+) True G184463
TU249854 lncRNA downstream 15423 15678997 ~ 15680159 (+) True G184508
TU249871 lncRNA downstream 113655 15777229 ~ 15780546 (+) True G184521
TU249880 lncRNA downstream 134241 15797815 ~ 15798794 (+) True G184526
TU249922 lncRNA downstream 225791 15889365 ~ 15889585 (+) True G184561
XR_005636843.1 lncRNA downstream 251012 15914586 ~ 15920914 (+) False LOC120546249
XM_039782709.1 mRNA upstream 56407 15602335 ~ 15604166 (+) True chac1
XM_039782510.1 mRNA upstream 62680 15588083 ~ 15597893 (+) True dll4
XM_039780969.1 mRNA upstream 359866 15296281 ~ 15300707 (+) True vrtn
XM_039780970.1 mRNA upstream 359866 15296616 ~ 15300707 (+) False vrtn
XM_039780985.1 mRNA upstream 367321 15289674 ~ 15293252 (+) True LOC120546207
XM_039781221.1 mRNA downstream 16887 15680461 ~ 15687727 (+) True zfyve1
XM_039781224.1 mRNA downstream 31370 15694944 ~ 15719632 (+) True dpf3
XM_039781225.1 mRNA downstream 31370 15694944 ~ 15719632 (+) False dpf3
XM_039781226.1 mRNA downstream 39462 15703036 ~ 15719632 (+) False dpf3
XM_039782619.1 mRNA downstream 66473 15730047 ~ 15738980 (+) True stx7l
TU249798 other upstream 341737 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 367321 15289674 ~ 15293252 (+) False LOC120546207
TU249525 other upstream 1131203 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 1279386 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 1539059 14024484 ~ 14121514 (+) False LOC120546742
XR_005636865.1 other downstream 31370 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 31370 15694944 ~ 15716284 (+) False dpf3
TU249895 other downstream 251071 15914645 ~ 15968123 (+) False LOC120546249
TU250012 other downstream 735864 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 1101971 16765545 ~ 16776601 (+) False si:ch211-57i17.1

Expression Profile