RNA id: TU249880



Basic Information


Item Value
RNA id TU249880
length 254
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G184526
representative True

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15797815 ~ 15798794 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGGCCATAAAAACTGGGACTTGGGCATCAGGACTGGCTTCAGCGGCCATGTCGTAGAAACGCTTGGCTAAATGGATGTCCTGTTTGATGCCCAGGCCTTTCTCATGCATGTAACCCAGGTTAAACATGGCCTGGGCACTGTGCTGCTGCTCTGATGCCAGTCTGTAGTGGATGACAGCGGTCTCATAGTCCACATCTGTCCCGTAGCCGTAGAAGTGGTAGTCCCCTAGTTTTATCCTGGCCACAGTGTAACCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU249871 lncRNA upstream 17269 15777229 ~ 15780546 (+) True G184521
TU249854 lncRNA upstream 117656 15678997 ~ 15680159 (+) True G184508
TU249855 lncRNA upstream 142295 15654846 ~ 15655520 (+) True G184509
TU249823 lncRNA upstream 304288 15493204 ~ 15493527 (+) True G184481
TU249814 lncRNA upstream 318735 15478491 ~ 15479080 (+) True G184474
TU249922 lncRNA downstream 90571 15889365 ~ 15889585 (+) True G184561
XR_005636843.1 lncRNA downstream 115792 15914586 ~ 15920914 (+) False LOC120546249
TU249891 lncRNA downstream 115851 15914645 ~ 15921798 (+) True LOC120546249
TU249893 lncRNA downstream 115851 15914645 ~ 15921798 (+) False LOC120546249
TU249894 lncRNA downstream 115851 15914645 ~ 15921798 (+) False LOC120546249
XM_039781271.1 mRNA upstream 21598 15772660 ~ 15776217 (+) True ccn2a
XM_039782619.1 mRNA upstream 58835 15730047 ~ 15738980 (+) True stx7l
XM_039781224.1 mRNA upstream 78183 15694944 ~ 15719632 (+) True dpf3
XM_039781050.1 mRNA downstream 55016 15853810 ~ 15877749 (+) True tmem200a
XM_039781069.1 mRNA downstream 187289 15986083 ~ 16014859 (+) True itpkb
XM_039781070.1 mRNA downstream 187289 15986083 ~ 16014859 (+) False itpkb
XM_039781072.1 mRNA downstream 218181 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA downstream 226366 16025160 ~ 16042239 (+) False coq8aa
XR_005636865.1 other upstream 81531 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 81531 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 134241 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 478979 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 504563 15289674 ~ 15293252 (+) False LOC120546207
TU249895 other downstream 115851 15914645 ~ 15968123 (+) False LOC120546249
TU250012 other downstream 600644 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 966751 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 1026900 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1494860 17293654 ~ 17295701 (+) True G184996

Expression Profile