Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU249891 |
| length | 1938 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | LOC120546249 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053129.1 |
| NCBI id | CM020926.1 |
| chromosome length | 36987114 |
| location | 15914586 ~ 15968123 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0006082 | organic acid metabolic process | biological_process |
| GO:0009063 | cellular amino acid catabolic process | biological_process |
| GO:0009072 | aromatic amino acid family metabolic process | biological_process |
| GO:0009074 | aromatic amino acid family catabolic process | biological_process |
| GO:0046395 | carboxylic acid catabolic process | biological_process |
| GO:0043436 | oxoacid metabolic process | biological_process |
| GO:0006520 | cellular amino acid metabolic process | biological_process |
| GO:0019752 | carboxylic acid metabolic process | biological_process |
| GO:0016054 | organic acid catabolic process | biological_process |
| GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU249922 | lncRNA | upstream | 25060 | 15889365 ~ 15889585 (+) | True | G184561 |
| TU249880 | lncRNA | upstream | 115851 | 15797815 ~ 15798794 (+) | True | G184526 |
| TU249871 | lncRNA | upstream | 134099 | 15777229 ~ 15780546 (+) | True | G184521 |
| TU249854 | lncRNA | upstream | 234486 | 15678997 ~ 15680159 (+) | True | G184508 |
| TU249855 | lncRNA | upstream | 259125 | 15654846 ~ 15655520 (+) | True | G184509 |
| TU249901 | lncRNA | downstream | 4273 | 15926071 ~ 15927662 (+) | True | G184540 |
| TU249948 | lncRNA | downstream | 124011 | 16045809 ~ 16047681 (+) | True | G184584 |
| TU249994 | lncRNA | downstream | 369413 | 16291211 ~ 16356548 (+) | True | G184618 |
| TU249989 | lncRNA | downstream | 411257 | 16333055 ~ 16391851 (+) | False | nkain2 |
| TU250006 | lncRNA | downstream | 457709 | 16379507 ~ 16381781 (+) | False | cenpw |
| XM_039781050.1 | mRNA | upstream | 36896 | 15853810 ~ 15877749 (+) | True | tmem200a |
| XM_039781271.1 | mRNA | upstream | 138428 | 15772660 ~ 15776217 (+) | True | ccn2a |
| XM_039782619.1 | mRNA | upstream | 175665 | 15730047 ~ 15738980 (+) | True | stx7l |
| XM_039781225.1 | mRNA | upstream | 195013 | 15694944 ~ 15719632 (+) | False | dpf3 |
| XM_039781069.1 | mRNA | downstream | 64285 | 15986083 ~ 16014859 (+) | True | itpkb |
| XM_039781070.1 | mRNA | downstream | 64285 | 15986083 ~ 16014859 (+) | False | itpkb |
| XM_039781072.1 | mRNA | downstream | 95177 | 16016975 ~ 16042239 (+) | True | coq8aa |
| XM_039781073.1 | mRNA | downstream | 103362 | 16025160 ~ 16042239 (+) | False | coq8aa |
| XM_039781210.1 | mRNA | downstream | 187554 | 16109352 ~ 16126914 (+) | True | med23 |
| XR_005636865.1 | other | upstream | 198361 | 15694944 ~ 15716284 (+) | False | dpf3 |
| XR_005636866.1 | other | upstream | 198361 | 15694944 ~ 15716284 (+) | False | dpf3 |
| TU249859 | other | upstream | 251071 | 15660573 ~ 15663574 (+) | True | rhov |
| TU249798 | other | upstream | 595809 | 15301925 ~ 15318836 (+) | True | G184458 |
| XR_005636833.1 | other | upstream | 621393 | 15289674 ~ 15293252 (+) | False | LOC120546207 |
| TU250012 | other | downstream | 477640 | 16399438 ~ 16402103 (+) | False | G184628 |
| XR_005636928.1 | other | downstream | 843747 | 16765545 ~ 16776601 (+) | False | si:ch211-57i17.1 |
| TU250355 | other | downstream | 903896 | 16825694 ~ 16833314 (+) | True | G184859 |
| TU250543 | other | downstream | 1371856 | 17293654 ~ 17295701 (+) | True | G184996 |
| TU250558 | other | downstream | 1420039 | 17341837 ~ 17365977 (+) | False | map7b |
