RNA id: TU249893


Basic Information

Item Value
RNA id TU249893
length 1565
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id LOC120546249
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15914586 ~ 15968123 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATTTCTACCaatgagagagacagggagagaagaAAGCTAAAGAGACGgatcaaaaagaaagaaagagagagaatcaCAACTTTTACCTCAGGACTGAAGCGACCCTCTTTTCTCCCTGAGGAATTATTCTGTGGATTAGTGAAACCTGATGTGACACAACCACACCGACTGAATTCTAAAAAGTTTAAGTCTTGAAGTTATGTGACTTAAGTACGGACGGACAACTGCCAGGACAACTATGTAGCAGCAGACATCTGCAAGTCATTTCCACCTACATCCATTCAAACCTGCCCTTTTGAGGATCCTGAAAAACTTATGGAGGTGCTGAGTGGCCCCTGGGCTGATTTGGCTCTGCTCCTTCGACAGACCAtcatacaaacagacagagagacagacagctttCTTCCTCTCTGGCTGTTTGGCCTGCTGctgttcctgtctgtctctctgctgctgctgcaattGATTATCTACCTCAGCTGGAAACTCAGACAGGTTGAGGCTGATCTCTCGGCGTTTCCGCAAGACAGAAGCGCCATCTACAGGAAGATGTGCGGACGCACAAACCAGAGCAGGAGTGTTGGGTCGCACTCTCACACCTGACaggacacgcacgcacgcacacacacacacacacacacacgaGACACTTAAAATCTGCTGAAATGAACACTTGTAGGATTGTTTCAGGCAGTCCTGCCAGTCAACACGAGTATCTCTATAGAGCAATGTGACCAATATCTCAGACATAATGCCTTAAGAAGATGAATGTTAAagcctgcaaaagaaaaaaagaaagaaaaaaatcactgtcatttttagtcctccataCTCTTAGAGATGTATTTATCTCGTTTAAGGGTGGTAGGACAATCTGTCAACCGGAAATAAGTGTTTCGTATAACTGTACAGTTTTTTtgaacatatacacacacacacacacatacatacatacacacacttgtatcaataaatgatgaattcaatgaatgaatgaagaaatgaGCTGACCAACAGTTTTCAGAGTATAACAATCCTTTATTTAAACAGTGTTACACAGGGGACAAgtggctgtgtgttgtgtgggagAGACACAAGACAATCAAGCTGCTAGATAGAAAAACCCTACCGGTGATCATTTGTTGGCTAAAGAGGGAACGATGAGGCAGCAGCTTTCGTTGGTTTTTCAAAATGCGTTTCTTTACAAAGTTTTTGTTGGGAGtttttagtaagtaagtaaagttaaaatacaaaatggTGCTGGTATCTGTCTCATCTGTGGTACAAAGCCTGAGATATAACTGTAAAGAAGGCAGTCCAATCATCATTTGCCCTTTAAAACACCTACTTAATCAGCCAACAGATGTTATTATTGTTGGTTTTTTTCCACGTAACACTGGCCTCCATAATGTCAGCATGTTGAGATCCCTGACAGGTTTAACGTCAGCTGGCTCAGAATCGTCATCAGTTGCTTGGAGTGACATTATGGAGTTGCCACGGTAGTCACTGAAAACTTTCAACGGTCTGTCTGTGCTGTTTTCTATCTTTAATAAAAGTGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249922 lncRNA upstream 25060 15889365 ~ 15889585 (+) True G184561
TU249880 lncRNA upstream 115851 15797815 ~ 15798794 (+) True G184526
TU249871 lncRNA upstream 134099 15777229 ~ 15780546 (+) True G184521
TU249854 lncRNA upstream 234486 15678997 ~ 15680159 (+) True G184508
TU249855 lncRNA upstream 259125 15654846 ~ 15655520 (+) True G184509
TU249901 lncRNA downstream 4273 15926071 ~ 15927662 (+) True G184540
TU249948 lncRNA downstream 124011 16045809 ~ 16047681 (+) True G184584
TU249994 lncRNA downstream 369413 16291211 ~ 16356548 (+) True G184618
TU249989 lncRNA downstream 411257 16333055 ~ 16391851 (+) False nkain2
TU250006 lncRNA downstream 457709 16379507 ~ 16381781 (+) False cenpw
XM_039781050.1 mRNA upstream 36896 15853810 ~ 15877749 (+) True tmem200a
XM_039781271.1 mRNA upstream 138428 15772660 ~ 15776217 (+) True ccn2a
XM_039782619.1 mRNA upstream 175665 15730047 ~ 15738980 (+) True stx7l
XM_039781225.1 mRNA upstream 195013 15694944 ~ 15719632 (+) False dpf3
XM_039781069.1 mRNA downstream 64285 15986083 ~ 16014859 (+) True itpkb
XM_039781070.1 mRNA downstream 64285 15986083 ~ 16014859 (+) False itpkb
XM_039781072.1 mRNA downstream 95177 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA downstream 103362 16025160 ~ 16042239 (+) False coq8aa
XM_039781210.1 mRNA downstream 187554 16109352 ~ 16126914 (+) True med23
XR_005636865.1 other upstream 198361 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 198361 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 251071 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 595809 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 621393 15289674 ~ 15293252 (+) False LOC120546207
TU250012 other downstream 477640 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 843747 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 903896 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1371856 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 1420039 17341837 ~ 17365977 (+) False map7b

Expression Profile